Wall clock time and date at job start Mon Mar 30 2020 03:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48500 * 109.47025 * 264.83688 * 3 2 1 5 5 H 1.48498 * 109.46957 * 24.83731 * 3 2 1 6 6 H 1.48493 * 109.46762 * 144.83554 * 3 2 1 7 7 C 1.37874 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99806 * 4.90526 * 7 2 1 9 9 C 1.50701 * 120.00048 * 184.89961 * 7 2 1 10 10 H 1.08996 * 109.72587 * 335.65118 * 9 7 2 11 11 C 1.53421 * 109.73048 * 96.34432 * 9 7 2 12 12 C 1.53015 * 109.81420 * 170.30695 * 11 9 7 13 13 C 1.53415 * 109.81871 * 288.02882 * 12 11 9 14 14 C 1.50792 * 108.12143 * 50.64360 * 13 12 11 15 15 C 1.34090 * 128.94997 * 163.28370 * 14 13 12 16 16 Cl 1.73602 * 125.97846 * 0.38660 * 15 14 13 17 17 N 1.36660 * 108.04175 * 180.36898 * 15 14 13 18 18 H 0.97000 * 125.60966 * 179.97438 * 17 15 14 19 19 C 1.36806 * 108.78815 * 359.93478 * 17 15 14 20 20 C 1.33942 * 108.06378 * 359.93879 * 19 17 15 21 21 H 0.96998 * 120.00442 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.41220 * 290.41325 * 11 9 7 23 23 H 1.08997 * 109.41102 * 50.19813 * 11 9 7 24 24 H 1.09001 * 109.41306 * 167.92088 * 12 11 9 25 25 H 1.09008 * 109.41798 * 48.13918 * 12 11 9 26 26 H 1.08999 * 109.73538 * 290.98494 * 13 12 11 27 27 H 1.09003 * 109.77617 * 170.32344 * 13 12 11 28 28 H 1.08002 * 125.97108 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6057 1.9835 -1.3944 5 1 1.3963 2.6817 0.5881 6 1 3.4878 1.4741 0.8063 7 6 2.0046 -1.1940 -0.0005 8 1 1.4675 -2.1276 -0.0809 9 6 3.5074 -1.1964 0.1109 10 1 3.9041 -0.2449 -0.2430 11 6 3.9181 -1.4186 1.5724 12 6 5.4264 -1.6619 1.6561 13 6 5.7613 -3.0499 1.0949 14 6 5.1097 -3.1782 -0.2589 15 6 5.3627 -4.0611 -1.2359 16 17 6.5433 -5.3326 -1.1810 17 7 4.5281 -3.7850 -2.2823 18 1 4.4968 -4.2687 -3.1225 19 6 3.7435 -2.7149 -1.9497 20 6 4.0773 -2.3236 -0.7129 21 1 -0.4851 0.8400 0.0004 22 1 3.6601 -0.5370 2.1592 23 1 3.3887 -2.2846 1.9697 24 1 5.7453 -1.6053 2.6969 25 1 5.9490 -0.9010 1.0763 26 1 5.3759 -3.8200 1.7632 27 1 6.8415 -3.1566 0.9950 28 1 2.9866 -2.2645 -2.5748 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260927100.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:12 Heat of formation + Delta-G solvation = 3.721557 kcal Electronic energy + Delta-G solvation = -13455.653938 eV Core-core repulsion = 11110.600565 eV Total energy + Delta-G solvation = -2345.053374 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.18926 -37.72861 -37.34043 -34.75334 -32.42964 -31.09334 -28.48479 -26.72273 -23.87700 -22.22322 -21.02883 -19.24739 -18.79773 -18.74955 -16.35395 -15.81972 -15.40962 -15.03583 -14.75812 -14.72722 -14.32879 -13.50026 -13.15573 -13.03456 -12.79407 -12.65684 -12.51173 -12.09818 -11.95817 -11.77651 -11.40972 -11.09429 -10.87397 -10.63539 -9.24354 -8.81787 -8.20768 -6.22530 0.84097 1.24111 1.40396 1.42214 1.53240 2.08161 2.41978 2.68702 3.15160 4.06542 4.24325 4.35069 4.45482 4.76554 4.87447 4.95604 4.98001 5.05389 5.09001 5.24210 5.33373 5.52519 5.60414 5.69630 5.84599 6.07167 6.24146 6.47401 6.71002 6.85030 7.42372 8.96159 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.041166 B = 0.008911 C = 0.007962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.008164 B = 3141.548829 C = 3516.009072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.014 3.986 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.245 1.245 7 C -0.495 4.495 8 H 0.028 0.972 9 C 0.076 3.924 10 H 0.035 0.965 11 C -0.107 4.107 12 C -0.111 4.111 13 C -0.039 4.039 14 C -0.157 4.157 15 C 0.051 3.949 16 Cl -0.016 7.016 17 N -0.554 5.554 18 H 0.427 0.573 19 C 0.010 3.990 20 C -0.149 4.149 21 H 0.264 0.736 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.154 -6.377 -2.225 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.183 4.183 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.168 1.168 7 C -0.533 4.533 8 H 0.046 0.954 9 C 0.057 3.943 10 H 0.053 0.947 11 C -0.145 4.145 12 C -0.148 4.148 13 C -0.077 4.077 14 C -0.166 4.166 15 C -0.086 4.086 16 Cl 0.012 6.988 17 N -0.155 5.155 18 H 0.267 0.733 19 C -0.119 4.119 20 C -0.156 4.156 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 14.108 -6.470 -2.361 15.699 hybrid contribution -0.479 0.376 -0.561 0.828 sum 13.629 -6.094 -2.922 15.213 Atomic orbital electron populations 1.70060 1.08210 1.27808 1.53307 1.25868 0.95308 1.02635 0.94463 0.85875 0.79479 0.78997 0.79457 1.19260 1.21805 1.16834 1.21129 0.91037 0.92570 1.48582 0.95381 1.17723 0.92810 0.92041 0.91749 0.94706 1.21709 0.95415 0.99790 0.97621 1.21570 0.95481 0.96699 1.01078 1.20053 0.99442 0.97303 0.90898 1.19508 1.01505 0.97983 0.97558 1.20193 0.98205 0.98122 0.92069 1.98332 1.53777 1.48633 1.98044 1.41871 1.30463 1.27640 1.15556 0.73332 1.21490 0.99479 0.92328 0.98643 1.19843 0.99055 1.01190 0.95480 0.92758 0.93944 0.94024 0.90289 0.92472 0.91177 0.89784 0.81103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.15 13.96 21.45 0.30 -58.85 15 2 C 0.01 0.78 5.47 84.65 0.46 1.24 15 3 Si 0.94 43.80 27.00 68.60 1.85 45.65 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 15 6 H -0.24 -10.62 6.81 99.48 0.68 -9.94 15 7 C -0.50 -27.88 8.55 25.60 0.22 -27.66 15 8 H 0.03 1.78 8.06 -2.91 -0.02 1.76 15 9 C 0.08 3.56 2.14 -12.11 -0.03 3.53 15 10 H 0.04 1.64 5.28 -2.39 -0.01 1.62 15 11 C -0.11 -4.47 5.16 30.74 0.16 -4.32 15 12 C -0.11 -3.59 5.85 30.74 0.18 -3.41 15 13 C -0.04 -1.21 6.18 30.02 0.19 -1.02 15 14 C -0.16 -5.60 5.92 -19.98 -0.12 -5.72 15 15 C 0.05 1.59 7.77 82.99 0.64 2.24 15 16 Cl -0.02 -0.39 29.19 -2.72 -0.08 -0.47 15 17 N -0.55 -16.56 6.10 -186.31 -1.14 -17.69 15 18 H 0.43 9.49 8.96 -92.71 -0.83 8.65 15 19 C 0.01 0.38 11.49 82.94 0.95 1.33 15 20 C -0.15 -6.24 5.43 -20.01 -0.11 -6.35 15 21 H 0.26 15.37 8.31 -92.71 -0.77 14.60 15 22 H 0.04 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.04 1.82 8.07 -2.39 -0.02 1.80 15 24 H 0.08 2.13 8.14 -2.39 -0.02 2.11 15 25 H 0.06 1.84 8.10 -2.38 -0.02 1.82 15 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 15 28 H 0.17 6.31 8.06 -2.91 -0.02 6.29 15 Total: -1.00 -64.79 248.64 3.80 -60.99 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.31 Total: 10.52 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 2.55 Total: -40.14 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -0.84 Total: -76.55 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.85 Total: 45.65 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -64.79 3.80 -60.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260927100.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.709 kcal (2) G-P(sol) polarization free energy of solvation -64.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds