Wall clock time and date at job start Mon Mar 30 2020 03:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00180 * 2 1 4 4 H 1.48501 * 109.46927 * 240.00052 * 3 2 1 5 5 H 1.48499 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47401 * 119.99900 * 3 2 1 7 7 C 1.37878 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00212 * 185.13796 * 7 2 1 9 9 C 1.50705 * 119.99925 * 5.13348 * 7 2 1 10 10 H 1.08997 * 109.72406 * 25.52317 * 9 7 2 11 11 C 1.53412 * 109.73379 * 264.87496 * 9 7 2 12 12 C 1.53007 * 109.82639 * 189.71104 * 11 9 7 13 13 C 1.53410 * 109.82584 * 71.96107 * 12 11 9 14 14 C 1.50801 * 108.11272 * 309.35602 * 13 12 11 15 15 C 1.34095 * 128.94340 * 196.72757 * 14 13 12 16 16 Cl 1.73599 * 125.98189 * 359.66080 * 15 14 13 17 17 N 1.36657 * 108.03656 * 179.63861 * 15 14 13 18 18 H 0.96998 * 125.60616 * 180.08955 * 17 15 14 19 19 C 1.36796 * 108.79276 * 0.06701 * 17 15 14 20 20 C 1.33949 * 108.06282 * 0.05539 * 19 17 15 21 21 H 0.96997 * 119.99463 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.41593 * 309.81995 * 11 9 7 23 23 H 1.09010 * 109.41343 * 69.60201 * 11 9 7 24 24 H 1.09002 * 109.41433 * 192.07487 * 12 11 9 25 25 H 1.08996 * 109.41206 * 311.85423 * 12 11 9 26 26 H 1.09002 * 109.74572 * 189.69900 * 13 12 11 27 27 H 1.09000 * 109.72827 * 69.00319 * 13 12 11 28 28 H 1.08003 * 125.97253 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1960 0.0843 9 6 1.2555 -2.4966 -0.1157 10 1 0.3067 -2.3311 -0.6260 11 6 0.9981 -3.0727 1.2827 12 6 0.4580 -4.4994 1.1649 13 6 1.5791 -5.4446 0.7143 14 6 2.2355 -4.8460 -0.5043 15 6 3.0341 -5.4348 -1.4064 16 17 3.5381 -7.0960 -1.3922 17 7 3.3813 -4.4984 -2.3391 18 1 3.9525 -4.6518 -3.1080 19 6 2.7906 -3.3091 -2.0107 20 6 2.0832 -3.4927 -0.8881 21 1 -0.4849 0.8401 -0.0004 22 1 1.9304 -3.0838 1.8473 23 1 0.2688 -2.4509 1.8021 24 1 0.0778 -4.8240 2.1335 25 1 -0.3502 -4.5216 0.4339 26 1 1.1607 -6.4198 0.4653 27 1 2.3134 -5.5515 1.5127 28 1 2.8793 -2.3835 -2.5602 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260927101.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:14 Heat of formation + Delta-G solvation = 18.690383 kcal Electronic energy + Delta-G solvation = -13402.880140 eV Core-core repulsion = 11058.475863 eV Total energy + Delta-G solvation = -2344.404277 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.64650 -36.30420 -35.68961 -32.83206 -30.23071 -29.49925 -26.63112 -24.89479 -22.33641 -20.51823 -19.53332 -17.54247 -17.22988 -16.21335 -14.53563 -14.25590 -13.95751 -13.55626 -13.17459 -12.57938 -12.34366 -11.73258 -11.54397 -11.37132 -11.12060 -10.92382 -10.83586 -10.69903 -10.34066 -9.96666 -9.65657 -9.04398 -8.98052 -8.36474 -7.68957 -7.26186 -5.96951 -3.99787 2.22526 2.71043 3.33496 3.38839 3.40950 3.76298 4.04161 4.48048 5.32870 5.62868 5.80226 5.92096 5.95240 6.32782 6.51593 6.55627 6.66720 6.73696 6.76557 7.06598 7.17755 7.30709 7.51376 7.76695 7.80935 7.99302 8.03377 8.11508 8.53511 9.09587 9.63620 11.11343 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.040235 B = 0.008430 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.742676 B = 3320.591382 C = 3818.389577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.503 4.503 8 H 0.053 0.947 9 C 0.100 3.900 10 H 0.063 0.937 11 C -0.100 4.100 12 C -0.117 4.117 13 C -0.041 4.041 14 C -0.139 4.139 15 C 0.042 3.958 16 Cl -0.052 7.052 17 N -0.572 5.572 18 H 0.407 0.593 19 C 0.004 3.996 20 C -0.108 4.108 21 H 0.261 0.739 22 H 0.042 0.958 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 -9.569 -2.684 10.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.081 3.919 10 H 0.081 0.919 11 C -0.138 4.138 12 C -0.154 4.154 13 C -0.079 4.079 14 C -0.148 4.148 15 C -0.093 4.093 16 Cl -0.024 7.024 17 N -0.173 5.173 18 H 0.243 0.757 19 C -0.124 4.124 20 C -0.114 4.114 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.298 -9.597 -2.793 10.880 hybrid contribution 0.948 0.688 -0.472 1.263 sum 5.246 -8.909 -3.265 10.842 Atomic orbital electron populations 1.69934 1.05893 1.26631 1.50631 1.24983 0.94779 0.98970 0.95034 0.86727 0.79634 0.83419 0.78592 1.20375 1.21429 1.20316 1.21037 0.93120 0.90052 1.49947 0.92827 1.17526 0.94846 0.89608 0.89919 0.91907 1.21663 0.99256 0.92423 1.00462 1.21636 0.97233 0.97159 0.99419 1.20003 0.96970 0.97226 0.93694 1.19344 1.02258 0.94933 0.98278 1.20091 1.08605 0.83005 0.97612 1.98310 1.91069 1.14764 1.98239 1.41948 1.43208 1.08801 1.23376 0.75722 1.21469 1.01900 0.88050 1.00937 1.20314 1.01570 0.93471 0.96074 0.92940 0.93898 0.92636 0.93531 0.92600 0.92477 0.91997 0.81290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 12.86 55.43 0.71 -24.66 15 2 C 0.06 1.74 5.45 -17.82 -0.10 1.64 15 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.50 -13.48 8.00 -34.44 -0.28 -13.76 15 8 H 0.05 1.45 7.82 -52.49 -0.41 1.04 15 9 C 0.10 2.48 2.54 -92.66 -0.24 2.24 15 10 H 0.06 1.73 7.41 -51.93 -0.38 1.35 15 11 C -0.10 -2.26 5.16 -26.51 -0.14 -2.40 15 12 C -0.12 -2.22 5.85 -26.52 -0.16 -2.37 15 13 C -0.04 -0.73 6.18 -27.62 -0.17 -0.91 15 14 C -0.14 -2.73 5.92 -104.79 -0.62 -3.35 15 15 C 0.04 0.75 7.77 -16.86 -0.13 0.61 15 16 Cl -0.05 -0.75 29.19 -51.86 -1.51 -2.27 15 17 N -0.57 -9.40 6.10 -10.24 -0.06 -9.46 15 18 H 0.41 5.18 8.96 -40.82 -0.37 4.82 15 19 C 0.00 0.07 11.49 -16.84 -0.19 -0.12 15 20 C -0.11 -2.38 5.43 -104.84 -0.57 -2.95 15 21 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 22 H 0.04 0.98 8.07 -51.93 -0.42 0.56 15 23 H 0.05 1.34 8.14 -51.92 -0.42 0.91 15 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 15 25 H 0.06 1.08 8.10 -51.93 -0.42 0.66 15 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 28 H 0.17 3.12 8.06 -52.48 -0.42 2.70 15 LS Contribution 252.11 15.07 3.80 3.80 Total: -1.00 -28.39 252.11 -7.92 -36.32 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.25 Total: 1.71 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -2.58 Total: -21.36 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.65 Total: -34.12 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.51 Total: -2.27 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.39 -7.92 -36.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260927101.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.006 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds