Wall clock time and date at job start Mon Mar 30 2020 02:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30803 * 1 3 3 Si 1.86799 * 120.00259 * 2 1 4 4 H 1.48503 * 109.47056 * 270.00036 * 3 2 1 5 5 H 1.48493 * 109.46992 * 30.00216 * 3 2 1 6 6 H 1.48502 * 109.46895 * 150.00207 * 3 2 1 7 7 C 1.40173 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99461 * 179.97438 * 7 2 1 9 9 C 1.39843 * 120.00421 * 359.97438 * 7 2 1 10 10 C 1.39426 * 126.87038 * 359.97438 * 9 7 2 11 11 N 1.33319 * 107.08199 * 180.30133 * 10 9 7 12 12 C 1.30802 * 109.25552 * 359.55820 * 11 10 9 13 13 C 1.50703 * 125.15699 * 180.17850 * 12 11 10 14 14 H 1.08998 * 110.76106 * 167.35937 * 13 12 11 15 15 C 1.55141 * 110.85408 * 291.07904 * 13 12 11 16 16 C 1.53858 * 106.89792 * 160.29453 * 15 13 12 17 17 C 1.54273 * 108.92414 * 312.74395 * 16 15 13 18 18 S 1.83099 * 104.65252 * 27.95516 * 17 16 15 19 19 O 1.34014 * 109.69036 * 0.45349 * 12 11 10 20 20 H 0.97000 * 119.99281 * 359.97438 * 1 2 3 21 21 H 1.08002 * 126.45543 * 0.03001 * 10 9 7 22 22 H 1.08994 * 109.97527 * 279.65530 * 15 13 12 23 23 H 1.09005 * 109.97562 * 40.93535 * 15 13 12 24 24 H 1.08996 * 109.60917 * 192.82650 * 16 15 13 25 25 H 1.08999 * 109.46732 * 72.57639 * 16 15 13 26 26 H 1.08997 * 110.40446 * 269.16078 * 17 16 15 27 27 H 1.09008 * 110.50089 * 146.79801 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4896 2.0464 -1.4001 5 1 1.4396 2.6526 0.7001 6 1 3.5397 1.4400 0.7000 7 6 2.0088 -1.2140 -0.0005 8 1 3.0888 -1.2140 -0.0010 9 6 1.3096 -2.4251 -0.0005 10 6 -0.0747 -2.5918 0.0005 11 7 -0.3110 -3.9039 0.0068 12 6 0.8277 -4.5474 0.0001 13 6 0.9771 -6.0470 0.0003 14 1 2.0036 -6.3330 -0.2290 15 6 0.5214 -6.6473 1.3563 16 6 0.2301 -8.1379 1.1102 17 6 -0.6353 -8.2756 -0.1595 18 16 -0.1955 -6.8203 -1.1799 19 8 1.8416 -3.6710 -0.0007 20 1 -0.4849 0.8401 0.0004 21 1 -0.8157 -1.8062 0.0009 22 1 1.3144 -6.5401 2.0962 23 1 -0.3814 -6.1436 1.7019 24 1 -0.3054 -8.5519 1.9645 25 1 1.1693 -8.6736 0.9726 26 1 -1.6942 -8.2530 0.0980 27 1 -0.3933 -9.1976 -0.6883 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260934755.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:20 Heat of formation + Delta-G solvation = -3.403802 kcal Electronic energy + Delta-G solvation = -13052.983299 eV Core-core repulsion = 10709.664653 eV Total energy + Delta-G solvation = -2343.318646 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.00196 -35.87803 -34.10866 -32.75815 -30.47099 -28.41595 -25.56402 -23.65710 -21.01488 -20.73818 -19.51518 -17.67441 -16.16473 -15.90223 -15.32806 -14.74897 -14.33457 -13.85916 -13.57800 -12.83209 -12.44179 -12.11374 -11.86956 -11.55301 -11.43314 -11.32099 -11.13221 -10.70493 -10.60869 -10.33809 -9.69053 -9.57675 -9.40059 -8.68710 -7.38592 -7.12514 -6.96892 -4.59106 2.04946 2.71316 2.84646 2.95029 3.00500 3.38357 3.71129 4.32815 4.50189 4.83230 4.97313 5.08084 5.17203 5.45118 5.48028 5.68158 5.76715 5.85199 5.99964 6.09161 6.43986 6.82708 7.15028 7.40009 7.53335 8.13371 8.28726 8.52459 8.66860 9.72473 9.97871 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.075257 B = 0.006315 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.971537 B = 4432.984764 C = 4529.562519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.069 3.931 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.419 4.419 8 H 0.086 0.914 9 C 0.149 3.851 10 C -0.168 4.168 11 N -0.425 5.425 12 C 0.011 3.989 13 C 0.094 3.906 14 H 0.100 0.900 15 C -0.122 4.122 16 C -0.126 4.126 17 C -0.083 4.083 18 S -0.265 6.265 19 O -0.242 6.242 20 H 0.287 0.713 21 H 0.195 0.805 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 -7.972 2.242 8.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.150 4.150 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.449 4.449 8 H 0.104 0.896 9 C 0.095 3.905 10 C -0.317 4.317 11 N -0.153 5.153 12 C -0.187 4.187 13 C -0.035 4.035 14 H 0.118 0.882 15 C -0.162 4.162 16 C -0.164 4.164 17 C -0.231 4.231 18 S -0.038 6.038 19 O -0.134 6.134 20 H 0.099 0.901 21 H 0.211 0.789 22 H 0.100 0.900 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.186 -7.954 1.144 8.038 hybrid contribution 1.366 0.796 1.061 1.904 sum 1.551 -7.158 2.206 7.650 Atomic orbital electron populations 1.69587 1.07641 1.29712 1.33864 1.25889 0.95102 1.01481 0.92561 0.85754 0.79787 0.78467 0.79493 1.19035 1.19719 1.18356 1.18426 0.94975 0.86843 1.44676 0.89615 1.20778 0.92982 0.81576 0.95140 1.24251 0.95115 0.90816 1.21483 1.69584 1.27122 1.07003 1.11620 1.23483 0.81693 0.91071 1.22482 1.21384 0.99424 0.87984 0.94683 0.88224 1.22737 1.03191 0.93910 0.96347 1.22253 0.99934 0.97055 0.97157 1.23953 1.03018 0.98542 0.97593 1.87786 1.60315 1.26938 1.28731 1.84290 1.37384 1.16436 1.75270 0.90141 0.78904 0.89997 0.89518 0.90234 0.90967 0.89308 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.77 10.32 55.56 0.57 -19.20 15 2 C 0.07 1.68 5.50 -17.26 -0.09 1.59 15 3 Si 0.94 18.08 29.56 -169.99 -5.03 13.06 15 4 H -0.27 -5.01 7.11 56.52 0.40 -4.61 15 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 7 C -0.42 -11.27 9.45 -38.26 -0.36 -11.64 15 8 H 0.09 2.17 7.85 -52.48 -0.41 1.76 15 9 C 0.15 4.29 7.08 -38.54 -0.27 4.01 15 10 C -0.17 -4.86 10.89 -16.46 -0.18 -5.04 15 11 N -0.42 -11.68 11.04 -10.02 -0.11 -11.79 15 12 C 0.01 0.28 7.08 -12.72 -0.09 0.19 15 13 C 0.09 1.86 3.77 -26.75 -0.10 1.76 15 14 H 0.10 1.81 8.14 -51.93 -0.42 1.38 15 15 C -0.12 -1.96 5.88 -25.15 -0.15 -2.11 15 16 C -0.13 -1.53 6.39 -25.62 -0.16 -1.69 15 17 C -0.08 -1.10 7.34 37.82 0.28 -0.82 15 18 S -0.27 -5.00 22.57 -107.50 -2.43 -7.43 15 19 O -0.24 -6.70 10.81 3.12 0.03 -6.66 15 20 H 0.29 6.46 8.30 -40.82 -0.34 6.12 15 21 H 0.19 5.63 5.76 -52.49 -0.30 5.33 15 22 H 0.08 1.20 8.14 -51.93 -0.42 0.77 15 23 H 0.09 1.56 8.07 -51.93 -0.42 1.15 15 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 27 H 0.09 1.00 8.14 -51.92 -0.42 0.57 15 LS Contribution 247.82 15.07 3.73 3.73 Total: -1.00 -30.10 247.82 -7.16 -37.26 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -2.80 Total: 4.77 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -1.13 Total: -13.74 kcal Atomic # 7 Polarization: -31.45 SS G_CDS: 0.46 Total: -30.99 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: 0.03 Total: -6.66 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -2.43 Total: -7.43 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.10 -7.16 -37.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260934755.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.858 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds