Wall clock time and date at job start Mon Mar 30 2020 02:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30803 * 1 3 3 Si 1.86799 * 120.00259 * 2 1 4 4 H 1.48503 * 109.47056 * 270.00036 * 3 2 1 5 5 H 1.48493 * 109.46992 * 30.00216 * 3 2 1 6 6 H 1.48502 * 109.46895 * 150.00207 * 3 2 1 7 7 C 1.40173 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99461 * 179.97438 * 7 2 1 9 9 C 1.39843 * 120.00421 * 359.97438 * 7 2 1 10 10 C 1.39426 * 126.87038 * 359.97438 * 9 7 2 11 11 N 1.33319 * 107.08199 * 180.30133 * 10 9 7 12 12 C 1.30802 * 109.25552 * 359.55820 * 11 10 9 13 13 C 1.50703 * 125.15699 * 180.17850 * 12 11 10 14 14 H 1.08998 * 110.76106 * 167.35937 * 13 12 11 15 15 C 1.55141 * 110.85408 * 291.07904 * 13 12 11 16 16 C 1.53858 * 106.89792 * 160.29453 * 15 13 12 17 17 C 1.54273 * 108.92414 * 312.74395 * 16 15 13 18 18 S 1.83099 * 104.65252 * 27.95516 * 17 16 15 19 19 O 1.34014 * 109.69036 * 0.45349 * 12 11 10 20 20 H 0.97000 * 119.99281 * 359.97438 * 1 2 3 21 21 H 1.08002 * 126.45543 * 0.03001 * 10 9 7 22 22 H 1.08994 * 109.97527 * 279.65530 * 15 13 12 23 23 H 1.09005 * 109.97562 * 40.93535 * 15 13 12 24 24 H 1.08996 * 109.60917 * 192.82650 * 16 15 13 25 25 H 1.08999 * 109.46732 * 72.57639 * 16 15 13 26 26 H 1.08997 * 110.40446 * 269.16078 * 17 16 15 27 27 H 1.09008 * 110.50089 * 146.79801 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4896 2.0464 -1.4001 5 1 1.4396 2.6526 0.7001 6 1 3.5397 1.4400 0.7000 7 6 2.0088 -1.2140 -0.0005 8 1 3.0888 -1.2140 -0.0010 9 6 1.3096 -2.4251 -0.0005 10 6 -0.0747 -2.5918 0.0005 11 7 -0.3110 -3.9039 0.0068 12 6 0.8277 -4.5474 0.0001 13 6 0.9771 -6.0470 0.0003 14 1 2.0036 -6.3330 -0.2290 15 6 0.5214 -6.6473 1.3563 16 6 0.2301 -8.1379 1.1102 17 6 -0.6353 -8.2756 -0.1595 18 16 -0.1955 -6.8203 -1.1799 19 8 1.8416 -3.6710 -0.0007 20 1 -0.4849 0.8401 0.0004 21 1 -0.8157 -1.8062 0.0009 22 1 1.3144 -6.5401 2.0962 23 1 -0.3814 -6.1436 1.7019 24 1 -0.3054 -8.5519 1.9645 25 1 1.1693 -8.6736 0.9726 26 1 -1.6942 -8.2530 0.0980 27 1 -0.3933 -9.1976 -0.6883 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260934755.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:20 Heat of formation + Delta-G solvation = -24.244047 kcal Electronic energy + Delta-G solvation = -13053.887000 eV Core-core repulsion = 10709.664653 eV Total energy + Delta-G solvation = -2344.222347 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.08777 -37.15228 -36.05329 -34.82119 -32.10023 -30.22496 -27.14407 -25.33051 -22.95382 -22.26496 -21.29065 -19.69283 -17.85980 -17.51517 -16.93709 -16.75461 -15.77089 -15.27213 -15.17747 -14.44607 -14.08688 -13.93634 -13.31715 -13.06709 -13.02328 -12.65267 -12.57013 -12.48580 -12.01850 -11.76611 -11.59756 -11.42767 -10.87899 -10.79769 -9.44042 -8.85143 -8.63834 -6.65958 0.54172 1.09867 1.36357 1.48326 1.55405 1.66079 2.08828 2.38809 2.60478 3.02772 3.62513 3.78058 3.87515 4.05503 4.11986 4.32067 4.69269 4.76048 4.84826 4.91927 4.98063 5.10930 5.20563 5.30852 5.48523 6.09985 6.24306 6.41141 6.58981 7.61733 8.12999 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.075257 B = 0.006315 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.971537 B = 4432.984764 C = 4529.562519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.027 3.973 3 Si 1.025 2.975 4 H -0.256 1.256 5 H -0.257 1.257 6 H -0.252 1.252 7 C -0.449 4.449 8 H 0.094 0.906 9 C 0.120 3.880 10 C -0.211 4.211 11 N -0.446 5.446 12 C 0.024 3.976 13 C 0.089 3.911 14 H 0.116 0.884 15 C -0.117 4.117 16 C -0.114 4.114 17 C -0.061 4.061 18 S -0.332 6.332 19 O -0.257 6.257 20 H 0.300 0.700 21 H 0.183 0.817 22 H 0.097 0.903 23 H 0.060 0.940 24 H 0.112 0.888 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 -8.961 2.969 9.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.189 4.189 3 Si 0.842 3.158 4 H -0.181 1.181 5 H -0.181 1.181 6 H -0.176 1.176 7 C -0.479 4.479 8 H 0.112 0.888 9 C 0.067 3.933 10 C -0.357 4.357 11 N -0.174 5.174 12 C -0.177 4.177 13 C -0.040 4.040 14 H 0.134 0.866 15 C -0.157 4.157 16 C -0.152 4.152 17 C -0.209 4.209 18 S -0.106 6.106 19 O -0.150 6.150 20 H 0.112 0.888 21 H 0.199 0.801 22 H 0.116 0.884 23 H 0.079 0.921 24 H 0.130 0.870 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.005 -8.932 1.876 9.182 hybrid contribution 1.031 0.957 0.832 1.634 sum 2.036 -7.975 2.708 8.665 Atomic orbital electron populations 1.69633 1.09391 1.31642 1.32768 1.27130 0.95990 1.04854 0.90954 0.84572 0.78395 0.72828 0.80013 1.18078 1.18103 1.17565 1.18931 0.95665 0.87398 1.45869 0.88834 1.21243 0.93322 0.82442 0.96297 1.24105 0.95312 0.91373 1.24863 1.69537 1.28171 1.06639 1.13089 1.24781 0.80787 0.93247 1.18894 1.21758 1.00682 0.84305 0.97262 0.86594 1.22729 1.02380 0.96371 0.94249 1.22255 1.01423 0.93949 0.97565 1.24169 1.03785 0.96042 0.96892 1.87951 1.60798 1.30975 1.30865 1.84288 1.38253 1.16668 1.75817 0.88815 0.80086 0.88415 0.92109 0.86987 0.88418 0.88439 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.86 10.32 21.87 0.23 -41.64 15 2 C 0.03 1.33 5.50 85.32 0.47 1.80 15 3 Si 1.03 36.27 29.56 68.60 2.03 38.30 15 4 H -0.26 -8.70 7.11 99.48 0.71 -7.99 15 5 H -0.26 -8.42 7.11 99.48 0.71 -7.71 15 6 H -0.25 -8.58 7.11 99.48 0.71 -7.87 15 7 C -0.45 -24.90 9.45 23.13 0.22 -24.68 15 8 H 0.09 4.84 7.85 -2.91 -0.02 4.82 15 9 C 0.12 7.22 7.08 22.94 0.16 7.38 15 10 C -0.21 -12.87 10.89 84.75 0.92 -11.94 15 11 N -0.45 -25.63 11.04 -300.12 -3.31 -28.95 15 12 C 0.02 1.25 7.08 88.26 0.62 1.88 15 13 C 0.09 3.46 3.77 30.58 0.12 3.58 15 14 H 0.12 4.07 8.14 -2.39 -0.02 4.06 15 15 C -0.12 -3.54 5.88 31.62 0.19 -3.36 15 16 C -0.11 -2.27 6.39 31.32 0.20 -2.07 15 17 C -0.06 -1.40 7.34 72.41 0.53 -0.87 15 18 S -0.33 -12.31 22.57 -56.49 -1.27 -13.58 15 19 O -0.26 -14.76 10.81 -11.76 -0.13 -14.89 15 20 H 0.30 13.61 8.30 -92.71 -0.77 12.84 15 21 H 0.18 11.27 5.76 -2.91 -0.02 11.25 15 22 H 0.10 2.63 8.14 -2.39 -0.02 2.61 15 23 H 0.06 2.15 8.07 -2.38 -0.02 2.13 15 24 H 0.11 1.64 8.14 -2.39 -0.02 1.63 15 25 H 0.10 1.55 8.14 -2.39 -0.02 1.53 15 26 H 0.10 2.11 8.14 -2.39 -0.02 2.09 15 27 H 0.12 2.11 8.14 -2.38 -0.02 2.09 15 Total: -1.00 -69.71 247.82 2.14 -67.57 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 1.18 Total: 21.47 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 3.43 Total: -28.28 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -3.09 Total: -70.59 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.13 Total: -14.89 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Atomic # 16 Polarization: -12.31 SS G_CDS: -1.27 Total: -13.58 kcal Total: -69.71 2.14 -67.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260934755.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.322 kcal (2) G-P(sol) polarization free energy of solvation -69.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds