Wall clock time and date at job start Mon Mar 30 2020 02:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30796 * 1 3 3 Si 1.86807 * 119.99548 * 2 1 4 4 H 1.48504 * 109.47157 * 270.00200 * 3 2 1 5 5 H 1.48496 * 109.47135 * 30.00332 * 3 2 1 6 6 H 1.48501 * 109.46870 * 150.00305 * 3 2 1 7 7 C 1.40161 * 120.00547 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00502 * 180.02562 * 7 2 1 9 9 C 1.39849 * 119.99700 * 359.97438 * 7 2 1 10 10 C 1.39424 * 126.87341 * 0.02562 * 9 7 2 11 11 N 1.33328 * 107.08049 * 179.72626 * 10 9 7 12 12 C 1.30799 * 109.25638 * 0.42007 * 11 10 9 13 13 C 1.50700 * 125.15506 * 179.82892 * 12 11 10 14 14 H 1.08993 * 110.70163 * 192.83773 * 13 12 11 15 15 C 1.54261 * 110.95035 * 69.40439 * 13 12 11 16 16 C 1.52327 * 112.58746 * 217.12585 * 15 13 12 17 17 C 1.54258 * 112.59153 * 359.97438 * 16 15 13 18 18 S 1.83960 * 110.78620 * 316.15111 * 13 12 11 19 19 O 1.34019 * 109.68863 * 359.56925 * 12 11 10 20 20 H 0.97006 * 120.00526 * 359.97438 * 1 2 3 21 21 H 1.08003 * 126.45645 * 359.97255 * 10 9 7 22 22 H 1.09003 * 108.86719 * 337.94522 * 15 13 12 23 23 H 1.08998 * 108.86463 * 96.44755 * 15 13 12 24 24 H 1.08998 * 108.86778 * 120.82186 * 16 15 13 25 25 H 1.09004 * 108.86386 * 239.18068 * 16 15 13 26 26 H 1.08993 * 110.79061 * 266.26091 * 17 16 15 27 27 H 1.08998 * 110.78674 * 142.80439 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6179 0.0000 4 1 2.4893 2.0466 -1.4001 5 1 1.4393 2.6527 0.7001 6 1 3.5395 1.4403 0.7000 7 6 2.0089 -1.2138 -0.0005 8 1 3.0889 -1.2138 -0.0001 9 6 1.3097 -2.4249 -0.0005 10 6 -0.0745 -2.5918 -0.0005 11 7 -0.3107 -3.9040 -0.0066 12 6 0.8281 -4.5473 -0.0013 13 6 0.9776 -6.0469 -0.0018 14 1 2.0038 -6.3319 0.2298 15 6 0.5350 -6.6449 -1.3531 16 6 -0.1828 -7.9792 -1.1955 17 6 -0.2981 -8.4195 0.2784 18 16 -0.1980 -6.8206 1.1830 19 8 1.8419 -3.6708 -0.0010 20 1 -0.4851 0.8401 0.0004 21 1 -0.8157 -1.8062 -0.0001 22 1 -0.1341 -5.9409 -1.8479 23 1 1.4155 -6.7923 -1.9786 24 1 -1.1841 -7.8927 -1.6174 25 1 0.3652 -8.7417 -1.7491 26 1 0.5302 -9.0725 0.5530 27 1 -1.2548 -8.9084 0.4623 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260935424.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:22 Heat of formation + Delta-G solvation = -22.231397 kcal Electronic energy + Delta-G solvation = -13052.596782 eV Core-core repulsion = 10708.461710 eV Total energy + Delta-G solvation = -2344.135072 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.10431 -37.12729 -36.06078 -34.83340 -32.13795 -30.25173 -27.24305 -25.59330 -22.94576 -22.25502 -20.97369 -19.69341 -17.85227 -17.58250 -17.00263 -16.75909 -15.76388 -15.34148 -15.17723 -14.40769 -14.09452 -13.83706 -13.41338 -13.10360 -13.03112 -12.74915 -12.60610 -12.51406 -12.02647 -11.64274 -11.46334 -11.35958 -10.86490 -10.78371 -9.44374 -8.85731 -8.69419 -6.67172 0.55646 1.10211 1.36213 1.42631 1.55616 1.64941 2.08565 2.37499 2.58981 3.02031 3.56714 3.76276 3.86361 4.12217 4.24577 4.27809 4.60090 4.78564 4.84258 5.00716 5.08928 5.11089 5.22206 5.30209 5.47321 6.08982 6.23262 6.39898 6.58058 7.60189 8.12344 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.075501 B = 0.006293 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.768429 B = 4448.196417 C = 4516.095574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.027 3.973 3 Si 1.025 2.975 4 H -0.254 1.254 5 H -0.258 1.258 6 H -0.253 1.253 7 C -0.449 4.449 8 H 0.094 0.906 9 C 0.121 3.879 10 C -0.211 4.211 11 N -0.447 5.447 12 C 0.024 3.976 13 C 0.096 3.904 14 H 0.115 0.885 15 C -0.116 4.116 16 C -0.114 4.114 17 C -0.052 4.052 18 S -0.337 6.337 19 O -0.257 6.257 20 H 0.300 0.700 21 H 0.183 0.817 22 H 0.052 0.948 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 -9.061 -2.684 9.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.189 4.189 3 Si 0.842 3.158 4 H -0.178 1.178 5 H -0.182 1.182 6 H -0.177 1.177 7 C -0.478 4.478 8 H 0.112 0.888 9 C 0.068 3.932 10 C -0.357 4.357 11 N -0.175 5.175 12 C -0.177 4.177 13 C -0.033 4.033 14 H 0.133 0.867 15 C -0.157 4.157 16 C -0.153 4.153 17 C -0.200 4.200 18 S -0.111 6.111 19 O -0.150 6.150 20 H 0.112 0.888 21 H 0.199 0.801 22 H 0.071 0.929 23 H 0.114 0.886 24 H 0.096 0.904 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.056 -8.953 -1.646 9.164 hybrid contribution 1.193 0.917 -0.798 1.703 sum 2.249 -8.036 -2.445 8.696 Atomic orbital electron populations 1.69627 1.09408 1.31683 1.32688 1.27134 0.95987 1.04878 0.90932 0.84568 0.78325 0.72775 0.80116 1.17784 1.18230 1.17690 1.18938 0.95695 0.87367 1.45788 0.88774 1.21247 0.93302 0.82443 0.96226 1.24112 0.95343 0.91334 1.24895 1.69540 1.28183 1.06702 1.13071 1.24673 0.80801 0.93149 1.19084 1.21594 1.00632 0.84468 0.96618 0.86670 1.22184 1.01850 0.97335 0.94308 1.21922 1.02348 0.95399 0.95613 1.24333 1.07509 0.93330 0.94804 1.88475 1.63689 1.18661 1.40238 1.84289 1.38195 1.16654 1.75826 0.88787 0.80065 0.92918 0.88554 0.90413 0.87057 0.86818 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.84 10.32 21.87 0.23 -41.62 15 2 C 0.03 1.33 5.50 85.31 0.47 1.80 15 3 Si 1.03 36.22 29.56 68.60 2.03 38.24 15 4 H -0.25 -8.47 7.11 99.48 0.71 -7.77 15 5 H -0.26 -8.50 7.11 99.48 0.71 -7.79 15 6 H -0.25 -8.66 7.11 99.48 0.71 -7.95 15 7 C -0.45 -24.84 9.45 23.13 0.22 -24.62 15 8 H 0.09 4.86 7.85 -2.91 -0.02 4.84 15 9 C 0.12 7.28 7.08 22.95 0.16 7.44 15 10 C -0.21 -12.90 10.89 84.75 0.92 -11.98 15 11 N -0.45 -25.78 11.04 -300.12 -3.31 -29.09 15 12 C 0.02 1.23 6.91 88.26 0.61 1.84 15 13 C 0.10 3.74 3.85 30.28 0.12 3.86 15 14 H 0.12 4.02 8.14 -2.39 -0.02 4.00 15 15 C -0.12 -3.57 5.92 30.80 0.18 -3.39 15 16 C -0.11 -2.44 6.30 30.80 0.19 -2.25 15 17 C -0.05 -1.14 7.46 72.41 0.54 -0.60 15 18 S -0.34 -12.47 22.58 -56.49 -1.28 -13.75 15 19 O -0.26 -14.73 10.81 -11.80 -0.13 -14.86 15 20 H 0.30 13.62 8.30 -92.70 -0.77 12.85 15 21 H 0.18 11.30 5.76 -2.91 -0.02 11.28 15 22 H 0.05 1.95 7.78 -2.39 -0.02 1.93 15 23 H 0.10 2.46 8.14 -2.39 -0.02 2.44 15 24 H 0.08 1.65 8.14 -2.39 -0.02 1.63 15 25 H 0.11 1.57 8.14 -2.38 -0.02 1.55 15 26 H 0.11 1.90 8.14 -2.39 -0.02 1.88 15 27 H 0.12 2.21 8.14 -2.39 -0.02 2.19 15 Total: -1.00 -70.01 247.54 2.13 -67.88 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 1.18 Total: 21.09 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 3.42 Total: -27.89 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: -3.09 Total: -70.71 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.13 Total: -14.86 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.24 kcal Atomic # 16 Polarization: -12.47 SS G_CDS: -1.28 Total: -13.75 kcal Total: -70.01 2.13 -67.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935424.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.649 kcal (2) G-P(sol) polarization free energy of solvation -70.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds