Wall clock time and date at job start Mon Mar 30 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09000 * 109.75274 * 299.59462 * 9 7 2 11 11 C 1.53227 * 109.74979 * 60.28438 * 9 7 2 12 12 O 1.43030 * 109.47965 * 168.76196 * 11 9 7 13 13 C 1.43224 * 113.79960 * 288.80489 * 12 11 9 14 14 C 1.51385 * 108.24965 * 50.36885 * 13 12 11 15 15 S 1.75556 * 126.09081 * 165.22090 * 14 13 12 16 16 C 1.75787 * 91.12330 * 179.97438 * 15 14 13 17 17 N 1.39618 * 125.22322 * 180.02562 * 16 15 14 18 18 C 1.33766 * 109.54821 * 0.02562 * 16 15 14 19 19 C 1.34733 * 123.80938 * 345.19620 * 14 13 12 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.46462 * 288.76053 * 11 9 7 22 22 H 1.08995 * 109.46913 * 48.75034 * 11 9 7 23 23 H 1.08993 * 109.70910 * 170.05746 * 13 12 11 24 24 H 1.09002 * 109.70854 * 290.68589 * 13 12 11 25 25 H 0.96997 * 120.00064 * 179.97438 * 17 16 15 26 26 H 0.96998 * 119.99873 * 359.97438 * 17 16 15 27 27 H 1.08002 * 122.29304 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6321 -2.5630 0.9002 11 6 0.3678 -2.5926 -1.2431 12 8 -0.1389 -3.9241 -1.3702 13 6 0.8527 -4.8863 -1.7475 14 6 2.0404 -4.7308 -0.8219 15 16 3.3507 -5.8815 -0.6186 16 6 4.1271 -4.8406 0.5663 17 7 5.3245 -5.1245 1.2257 18 6 3.3944 -3.7349 0.7391 19 6 2.2352 -3.6618 -0.0252 20 1 -0.4850 0.8400 0.0004 21 1 -0.4643 -1.8943 -1.1525 22 1 0.9575 -2.3425 -2.1250 23 1 0.4431 -5.8920 -1.6542 24 1 1.1635 -4.7094 -2.7771 25 1 5.6862 -4.4936 1.8675 26 1 5.7948 -5.9528 1.0420 27 1 3.6840 -2.9521 1.4245 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260946771.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:12 Heat of formation + Delta-G solvation = -18.229608 kcal Electronic energy + Delta-G solvation = -13404.296455 eV Core-core repulsion = 11060.334913 eV Total energy + Delta-G solvation = -2343.961541 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.66715 -36.36834 -33.79903 -32.95622 -29.70926 -28.49495 -25.17081 -23.52507 -22.51062 -20.59172 -17.81602 -17.54272 -16.28497 -15.92144 -15.01966 -14.82441 -14.35883 -14.23921 -13.56899 -12.93111 -12.27937 -12.16805 -11.89795 -11.44090 -11.18284 -10.93453 -10.67219 -10.45456 -10.27154 -9.60506 -9.40990 -9.14628 -8.62815 -8.40233 -7.61824 -6.83339 -6.10317 -4.14383 1.87464 1.92706 2.58972 3.25967 3.34238 3.38217 3.66358 4.19922 4.37942 4.91412 5.25552 5.71102 5.96011 6.04047 6.10190 6.46653 6.59359 6.73994 6.79990 7.16611 7.37171 7.56456 7.60484 7.62185 7.86393 7.91587 8.11751 8.42000 8.88626 9.49918 10.97870 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.029521 B = 0.010425 C = 0.008029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.263215 B = 2685.238388 C = 3486.340991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.073 3.927 10 H 0.051 0.949 11 C 0.067 3.933 12 O -0.392 6.392 13 C 0.152 3.848 14 C -0.291 4.291 15 S 0.046 5.954 16 C 0.102 3.898 17 N -0.857 5.857 18 C -0.213 4.213 19 C -0.002 4.002 20 H 0.264 0.736 21 H 0.120 0.880 22 H 0.033 0.967 23 H 0.083 0.917 24 H 0.049 0.951 25 H 0.401 0.599 26 H 0.395 0.605 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.579 -8.821 -0.425 11.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.053 3.947 10 H 0.069 0.931 11 C -0.009 4.009 12 O -0.311 6.311 13 C 0.073 3.927 14 C -0.408 4.408 15 S 0.301 5.699 16 C -0.116 4.116 17 N -0.402 5.402 18 C -0.248 4.248 19 C -0.013 4.013 20 H 0.073 0.927 21 H 0.137 0.863 22 H 0.052 0.948 23 H 0.101 0.899 24 H 0.067 0.933 25 H 0.231 0.769 26 H 0.223 0.777 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.533 -10.102 -1.030 12.074 hybrid contribution 0.941 2.282 0.808 2.597 sum 7.474 -7.820 -0.222 10.820 Atomic orbital electron populations 1.69861 1.05873 1.26870 1.50471 1.25004 0.94946 0.99274 0.94806 0.86446 0.80054 0.83361 0.77661 1.19773 1.20905 1.20921 1.21057 0.93195 0.89278 1.51013 0.91888 1.18494 0.90993 0.89351 0.95889 0.93108 1.23095 1.00341 0.80122 0.97346 1.87977 1.33687 1.19370 1.90077 1.20786 0.85135 0.93138 0.93660 1.24835 1.03551 1.00115 1.12306 1.83392 1.20223 1.24111 1.42143 1.21690 0.92427 0.98183 0.99255 1.41513 1.23580 1.25564 1.49537 1.19599 0.97953 0.98905 1.08323 1.19911 0.94686 0.94955 0.91778 0.92651 0.86274 0.94829 0.89853 0.93300 0.76883 0.77724 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 11.50 55.43 0.64 -24.25 15 2 C 0.06 1.66 5.31 -17.82 -0.09 1.56 15 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.88 15 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.51 -13.73 8.24 -34.44 -0.28 -14.02 15 8 H 0.06 1.70 7.20 -52.49 -0.38 1.33 15 9 C 0.07 1.89 2.66 -91.98 -0.25 1.65 15 10 H 0.05 1.43 8.14 -51.93 -0.42 1.01 15 11 C 0.07 1.66 5.67 37.27 0.21 1.87 15 12 O -0.39 -9.01 10.78 -35.23 -0.38 -9.39 15 13 C 0.15 2.96 7.23 36.34 0.26 3.22 15 14 C -0.29 -6.01 6.45 -35.21 -0.23 -6.23 15 15 S 0.05 0.78 23.31 -107.50 -2.51 -1.73 15 16 C 0.10 1.78 7.63 -15.57 -0.12 1.66 15 17 N -0.86 -10.98 9.13 31.62 0.29 -10.69 15 18 C -0.21 -4.42 9.21 -40.85 -0.38 -4.80 15 19 C 0.00 -0.05 5.41 -104.74 -0.57 -0.61 15 20 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 21 H 0.12 3.18 6.50 -51.93 -0.34 2.84 15 22 H 0.03 0.83 8.04 -51.93 -0.42 0.42 15 23 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 25 H 0.40 4.48 8.94 -40.82 -0.37 4.12 15 26 H 0.40 4.04 8.96 -40.82 -0.37 3.68 15 27 H 0.14 2.80 7.90 -52.49 -0.41 2.38 15 LS Contribution 243.66 15.07 3.67 3.67 Total: -1.00 -29.15 243.66 -7.43 -36.57 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -2.68 Total: 5.62 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.44 Total: -15.70 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.93 Total: -34.94 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.38 Total: -9.39 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.15 -7.43 -36.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946771.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.345 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds