Wall clock time and date at job start Mon Mar 30 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09000 * 109.75274 * 299.59462 * 9 7 2 11 11 C 1.53227 * 109.74979 * 60.28438 * 9 7 2 12 12 O 1.43030 * 109.47965 * 168.76196 * 11 9 7 13 13 C 1.43224 * 113.79960 * 288.80489 * 12 11 9 14 14 C 1.51385 * 108.24965 * 50.36885 * 13 12 11 15 15 S 1.75556 * 126.09081 * 165.22090 * 14 13 12 16 16 C 1.75787 * 91.12330 * 179.97438 * 15 14 13 17 17 N 1.39618 * 125.22322 * 180.02562 * 16 15 14 18 18 C 1.33766 * 109.54821 * 0.02562 * 16 15 14 19 19 C 1.34733 * 123.80938 * 345.19620 * 14 13 12 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.46462 * 288.76053 * 11 9 7 22 22 H 1.08995 * 109.46913 * 48.75034 * 11 9 7 23 23 H 1.08993 * 109.70910 * 170.05746 * 13 12 11 24 24 H 1.09002 * 109.70854 * 290.68589 * 13 12 11 25 25 H 0.96997 * 120.00064 * 179.97438 * 17 16 15 26 26 H 0.96998 * 119.99873 * 359.97438 * 17 16 15 27 27 H 1.08002 * 122.29304 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6321 -2.5630 0.9002 11 6 0.3678 -2.5926 -1.2431 12 8 -0.1389 -3.9241 -1.3702 13 6 0.8527 -4.8863 -1.7475 14 6 2.0404 -4.7308 -0.8219 15 16 3.3507 -5.8815 -0.6186 16 6 4.1271 -4.8406 0.5663 17 7 5.3245 -5.1245 1.2257 18 6 3.3944 -3.7349 0.7391 19 6 2.2352 -3.6618 -0.0252 20 1 -0.4850 0.8400 0.0004 21 1 -0.4643 -1.8943 -1.1525 22 1 0.9575 -2.3425 -2.1250 23 1 0.4431 -5.8920 -1.6542 24 1 1.1635 -4.7094 -2.7771 25 1 5.6862 -4.4936 1.8675 26 1 5.7948 -5.9528 1.0420 27 1 3.6840 -2.9521 1.4245 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260946771.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:12 Heat of formation + Delta-G solvation = -38.545919 kcal Electronic energy + Delta-G solvation = -13405.177436 eV Core-core repulsion = 11060.334913 eV Total energy + Delta-G solvation = -2344.842523 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.35965 -37.91022 -35.55740 -34.63831 -31.63292 -30.02102 -27.13843 -25.17566 -24.25557 -22.21276 -19.42520 -19.06674 -18.24553 -17.46877 -16.60211 -16.46803 -16.14781 -15.85571 -15.18590 -14.58238 -14.13685 -13.91428 -13.53757 -13.21309 -12.89507 -12.71905 -12.43443 -12.30266 -11.99651 -11.32069 -11.11455 -10.98157 -10.58005 -10.32177 -9.07129 -8.26024 -8.12601 -6.28537 0.36333 0.52672 1.06185 1.40901 1.42502 1.54509 2.03655 2.42357 3.03056 3.06023 3.27396 4.16708 4.41309 4.49255 4.56001 4.66848 4.83784 4.94239 5.13654 5.47696 5.50671 5.60056 5.70076 5.90670 6.23762 6.32570 6.48406 6.79899 6.87989 7.39087 8.91344 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.029521 B = 0.010425 C = 0.008029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.263215 B = 2685.238388 C = 3486.340991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.071 3.929 10 H 0.009 0.991 11 C 0.084 3.916 12 O -0.406 6.406 13 C 0.144 3.856 14 C -0.316 4.316 15 S 0.136 5.864 16 C 0.120 3.880 17 N -0.834 5.834 18 C -0.257 4.257 19 C -0.035 4.035 20 H 0.266 0.734 21 H 0.093 0.907 22 H 0.027 0.973 23 H 0.117 0.883 24 H 0.066 0.934 25 H 0.412 0.588 26 H 0.413 0.587 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.609 -10.364 -0.889 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.559 4.559 8 H 0.076 0.924 9 C 0.051 3.949 10 H 0.026 0.974 11 C 0.008 3.992 12 O -0.325 6.325 13 C 0.065 3.935 14 C -0.434 4.434 15 S 0.391 5.609 16 C -0.101 4.101 17 N -0.380 5.380 18 C -0.291 4.291 19 C -0.046 4.046 20 H 0.075 0.925 21 H 0.111 0.889 22 H 0.046 0.954 23 H 0.134 0.866 24 H 0.084 0.916 25 H 0.243 0.757 26 H 0.244 0.756 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.603 -11.672 -1.478 14.575 hybrid contribution 0.385 2.585 0.970 2.787 sum 8.988 -9.087 -0.508 12.791 Atomic orbital electron populations 1.69992 1.07217 1.27733 1.50969 1.25804 0.95758 1.02573 0.94334 0.85426 0.78854 0.79112 0.77807 1.19276 1.20280 1.20407 1.21260 0.93039 0.90400 1.51176 0.92423 1.18276 0.91525 0.90845 0.94303 0.97351 1.22656 0.98893 0.80998 0.96696 1.87916 1.35284 1.18965 1.90342 1.21160 0.84522 0.93513 0.94271 1.25074 1.05419 1.00985 1.11878 1.82984 1.16887 1.20776 1.40254 1.21841 0.92742 0.97161 0.98398 1.41560 1.21729 1.26416 1.48334 1.19395 0.98956 1.00678 1.10065 1.19724 0.95495 0.95052 0.94343 0.92486 0.88891 0.95444 0.86570 0.91621 0.75666 0.75616 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.21 11.50 21.45 0.25 -52.96 15 2 C 0.01 0.79 5.31 84.65 0.45 1.24 15 3 Si 0.96 43.59 29.54 68.60 2.03 45.61 15 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 7 C -0.52 -29.30 8.24 25.60 0.21 -29.09 15 8 H 0.06 3.22 7.20 -2.91 -0.02 3.20 15 9 C 0.07 3.86 2.66 -11.67 -0.03 3.83 15 10 H 0.01 0.52 8.14 -2.39 -0.02 0.50 15 11 C 0.08 4.36 5.67 72.06 0.41 4.77 15 12 O -0.41 -18.93 10.78 -148.98 -1.61 -20.54 15 13 C 0.14 5.38 7.23 71.45 0.52 5.90 15 14 C -0.32 -12.66 6.45 25.10 0.16 -12.50 15 15 S 0.14 4.08 23.31 -56.49 -1.32 2.76 15 16 C 0.12 3.87 7.63 82.43 0.63 4.50 15 17 N -0.83 -18.45 9.13 -53.87 -0.49 -18.94 15 18 C -0.26 -10.66 9.21 21.45 0.20 -10.46 15 19 C -0.03 -1.62 5.41 -19.94 -0.11 -1.72 15 20 H 0.27 14.48 8.31 -92.71 -0.77 13.70 15 21 H 0.09 5.26 6.50 -2.38 -0.02 5.24 15 22 H 0.03 1.41 8.04 -2.39 -0.02 1.40 15 23 H 0.12 3.55 8.14 -2.39 -0.02 3.53 15 24 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 25 H 0.41 7.94 8.94 -92.71 -0.83 7.11 15 26 H 0.41 6.55 8.96 -92.71 -0.83 5.72 15 27 H 0.12 5.16 7.90 -2.91 -0.02 5.13 15 Total: -1.00 -64.92 243.66 0.85 -64.07 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -0.45 Total: 13.52 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 2.44 Total: -33.53 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -0.25 Total: -71.90 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -1.61 Total: -20.54 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -1.32 Total: 2.76 kcal Total: -64.92 0.85 -64.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946771.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.524 kcal (2) G-P(sol) polarization free energy of solvation -64.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds