Wall clock time and date at job start Mon Mar 30 2020 02:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99752 * 2 1 4 4 H 1.48504 * 109.46941 * 85.08588 * 3 2 1 5 5 H 1.48492 * 109.47308 * 325.08375 * 3 2 1 6 6 H 1.48499 * 109.46623 * 205.08128 * 3 2 1 7 7 C 1.37871 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99976 * 172.78097 * 7 2 1 9 9 C 1.50697 * 119.99994 * 352.78945 * 7 2 1 10 10 H 1.09000 * 109.75278 * 56.67859 * 9 7 2 11 11 C 1.53228 * 109.74759 * 295.98781 * 9 7 2 12 12 O 1.43032 * 109.47629 * 191.24031 * 11 9 7 13 13 C 1.43220 * 113.80327 * 71.19232 * 12 11 9 14 14 C 1.51383 * 108.24794 * 309.63060 * 13 12 11 15 15 S 1.75566 * 126.08715 * 194.77827 * 14 13 12 16 16 C 1.75785 * 91.11924 * 179.97438 * 15 14 13 17 17 N 1.39626 * 125.22109 * 179.97438 * 16 15 14 18 18 C 1.33766 * 109.55277 * 0.04785 * 16 15 14 19 19 C 1.34726 * 123.81472 * 14.80272 * 14 13 12 20 20 H 0.97000 * 120.00069 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47153 * 311.23849 * 11 9 7 22 22 H 1.09000 * 109.46424 * 71.24492 * 11 9 7 23 23 H 1.08999 * 109.70927 * 69.31809 * 13 12 11 24 24 H 1.09003 * 109.70725 * 189.89883 * 13 12 11 25 25 H 0.97000 * 119.99484 * 180.02562 * 17 16 15 26 26 H 0.97000 * 119.99803 * 0.08099 * 17 16 15 27 27 H 1.07993 * 122.29961 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3927 2.1065 1.3950 5 1 1.5024 2.6205 -0.8013 6 1 3.5947 1.4124 -0.5935 7 6 2.0045 -1.1940 0.0005 8 1 3.0781 -1.1977 -0.1170 9 6 1.2600 -2.4938 0.1649 10 1 0.4987 -2.5829 -0.6101 11 6 0.6000 -2.5413 1.5470 12 8 0.1212 -3.8648 1.8016 13 6 1.1615 -4.8204 2.0377 14 6 2.1760 -4.7025 0.9204 15 16 3.4324 -5.8674 0.5371 16 6 3.9973 -4.8711 -0.7965 17 7 5.0656 -5.1841 -1.6393 18 6 3.2475 -3.7664 -0.8790 19 6 2.2343 -3.6612 0.0674 20 1 -0.4850 0.8400 0.0004 21 1 1.3304 -2.2665 2.3080 22 1 -0.2350 -1.8412 1.5749 23 1 1.6419 -4.6122 2.9938 24 1 0.7412 -5.8261 2.0489 25 1 5.3135 -4.5769 -2.3539 26 1 5.5593 -6.0091 -1.5105 27 1 3.4173 -3.0084 -1.6292 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260946776.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:14 Heat of formation + Delta-G solvation = -39.201942 kcal Electronic energy + Delta-G solvation = -13395.494101 eV Core-core repulsion = 11050.623131 eV Total energy + Delta-G solvation = -2344.870970 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.36708 -37.91686 -35.54503 -34.62618 -31.68229 -30.02599 -27.11374 -25.19788 -24.25870 -22.22234 -19.42534 -19.06017 -18.26060 -17.45902 -16.58091 -16.48264 -16.20390 -15.85464 -15.18325 -14.56829 -14.14116 -13.90951 -13.53520 -13.21564 -12.94377 -12.73458 -12.43068 -12.30800 -11.99740 -11.28516 -11.16074 -10.98919 -10.55205 -10.35425 -9.06873 -8.26254 -8.13144 -6.27611 0.36467 0.52837 1.06334 1.41369 1.42711 1.53354 2.03942 2.42618 3.03142 3.05059 3.25001 4.16453 4.39392 4.48640 4.55446 4.65791 4.80890 4.94517 5.12351 5.44739 5.50763 5.58784 5.70016 5.87363 6.23542 6.32627 6.47097 6.80601 6.88051 7.39203 8.91557 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.029523 B = 0.010351 C = 0.008070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.189791 B = 2704.287390 C = 3468.941370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.016 3.984 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.071 3.929 10 H 0.011 0.989 11 C 0.085 3.915 12 O -0.404 6.404 13 C 0.144 3.856 14 C -0.316 4.316 15 S 0.137 5.863 16 C 0.120 3.880 17 N -0.834 5.834 18 C -0.256 4.256 19 C -0.034 4.034 20 H 0.266 0.734 21 H 0.033 0.967 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.117 0.883 25 H 0.411 0.589 26 H 0.413 0.587 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.723 -10.470 0.556 13.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.183 4.183 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.051 3.949 10 H 0.029 0.971 11 C 0.009 3.991 12 O -0.324 6.324 13 C 0.066 3.934 14 C -0.434 4.434 15 S 0.391 5.609 16 C -0.102 4.102 17 N -0.381 5.381 18 C -0.291 4.291 19 C -0.046 4.046 20 H 0.075 0.925 21 H 0.051 0.949 22 H 0.100 0.900 23 H 0.086 0.914 24 H 0.135 0.865 25 H 0.243 0.757 26 H 0.244 0.756 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.809 -11.760 1.155 14.738 hybrid contribution 0.208 2.570 -1.064 2.790 sum 9.017 -9.189 0.091 12.875 Atomic orbital electron populations 1.70060 1.07293 1.27803 1.50640 1.25790 0.95658 1.02523 0.94331 0.85516 0.78693 0.79030 0.78304 1.19866 1.20725 1.19311 1.21195 0.93619 0.90636 1.50500 0.92499 1.18261 0.91968 0.90802 0.93903 0.97099 1.22594 0.98598 0.81430 0.96511 1.87908 1.32999 1.19783 1.91705 1.21167 0.85836 0.93643 0.92745 1.25073 1.08065 1.01404 1.08826 1.82986 1.28758 1.22215 1.26901 1.21847 0.94361 0.97152 0.96804 1.41565 1.33349 1.27668 1.35477 1.19390 1.02087 1.00831 1.06746 1.19721 0.95988 0.95192 0.93681 0.92534 0.94892 0.89955 0.91438 0.86526 0.75685 0.75614 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.53 12.10 21.45 0.26 -53.27 15 2 C 0.02 0.91 5.26 84.65 0.45 1.35 15 3 Si 0.96 43.57 29.54 68.60 2.03 45.60 15 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 15 7 C -0.52 -29.31 8.16 25.60 0.21 -29.10 15 8 H 0.06 3.18 7.34 -2.91 -0.02 3.16 15 9 C 0.07 3.86 2.54 -11.67 -0.03 3.83 15 10 H 0.01 0.68 8.14 -2.39 -0.02 0.66 15 11 C 0.09 4.36 5.77 72.06 0.42 4.77 15 12 O -0.40 -18.63 10.78 -148.98 -1.61 -20.23 15 13 C 0.14 5.32 7.23 71.45 0.52 5.84 15 14 C -0.32 -12.56 6.45 25.10 0.16 -12.40 15 15 S 0.14 4.07 23.31 -56.49 -1.32 2.75 15 16 C 0.12 3.87 7.63 82.43 0.63 4.50 15 17 N -0.83 -18.52 9.13 -53.86 -0.49 -19.02 15 18 C -0.26 -10.67 9.23 21.45 0.20 -10.47 15 19 C -0.03 -1.59 5.41 -19.94 -0.11 -1.70 15 20 H 0.27 14.58 8.31 -92.71 -0.77 13.81 15 21 H 0.03 1.65 8.04 -2.39 -0.02 1.63 15 22 H 0.08 4.57 7.02 -2.39 -0.02 4.56 15 23 H 0.07 2.25 8.14 -2.39 -0.02 2.23 15 24 H 0.12 3.51 8.14 -2.39 -0.02 3.49 15 25 H 0.41 8.01 8.94 -92.71 -0.83 7.18 15 26 H 0.41 6.57 8.96 -92.71 -0.83 5.74 15 27 H 0.12 5.16 7.97 -2.91 -0.02 5.14 15 Total: -1.00 -65.12 244.86 0.86 -64.26 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -0.45 Total: 13.29 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 2.44 Total: -33.38 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -0.23 Total: -72.28 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.61 Total: -20.23 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.32 Total: 2.75 kcal Total: -65.12 0.86 -64.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946776.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.060 kcal (2) G-P(sol) polarization free energy of solvation -65.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds