Wall clock time and date at job start Mon Mar 30 2020 03:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00283 * 2 1 4 4 H 1.48493 * 109.47096 * 270.00068 * 3 2 1 5 5 H 1.48505 * 109.46717 * 29.99799 * 3 2 1 6 6 H 1.48499 * 109.47072 * 149.99766 * 3 2 1 7 7 C 1.37877 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00090 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99998 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.47341 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47341 * 179.97438 * 10 9 7 12 12 C 1.38296 * 119.95038 * 270.25237 * 11 10 9 13 13 C 1.38275 * 120.15514 * 180.29819 * 12 11 10 14 14 C 1.38216 * 120.05817 * 359.44562 * 13 12 11 15 15 Cl 1.73598 * 120.04503 * 180.29740 * 14 13 12 16 16 C 1.38987 * 119.90716 * 0.27971 * 14 13 12 17 17 N 1.39753 * 120.07631 * 179.97438 * 16 14 13 18 18 C 1.38115 * 119.95470 * 89.99746 * 11 10 9 19 19 H 0.97011 * 119.99910 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47457 * 59.99404 * 9 7 2 21 21 H 1.08996 * 109.47010 * 299.99627 * 9 7 2 22 22 H 1.08995 * 109.46743 * 59.99587 * 10 9 7 23 23 H 1.09005 * 109.46662 * 299.99847 * 10 9 7 24 24 H 1.07996 * 119.92391 * 0.04535 * 12 11 10 25 25 H 1.08002 * 119.97295 * 179.72704 * 13 12 11 26 26 H 0.96992 * 120.00015 * 359.97438 * 17 16 14 27 27 H 0.96994 * 119.99575 * 180.02562 * 17 16 14 28 28 H 1.07999 * 120.03410 * 359.97438 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5283 -2.6368 -0.0001 12 6 6.2187 -2.6315 -1.1984 13 6 7.6015 -2.6377 -1.2034 14 6 8.2981 -2.6378 -0.0097 15 17 10.0341 -2.6379 -0.0164 16 6 7.6068 -2.6374 1.1961 17 7 8.3077 -2.6380 2.4052 18 6 6.2180 -2.6369 1.1965 19 1 -0.4850 0.8401 -0.0004 20 1 3.8745 -0.6809 0.8904 21 1 3.8751 -0.6798 -0.8895 22 1 3.6583 -3.1503 -0.8903 23 1 3.6577 -3.1507 0.8897 24 1 5.6767 -2.6265 -2.1325 25 1 8.1376 -2.6380 -2.1410 26 1 9.2776 -2.6390 2.4035 27 1 7.8241 -2.6381 3.2460 28 1 5.6779 -2.6365 2.1317 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261067329.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:25 Heat of formation + Delta-G solvation = -3.251828 kcal Electronic energy + Delta-G solvation = -12686.682255 eV Core-core repulsion = 10341.326493 eV Total energy + Delta-G solvation = -2345.355762 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.37068 -36.43355 -35.00668 -33.54174 -31.94676 -29.49060 -28.33878 -25.23591 -22.42468 -21.62721 -20.04798 -17.09942 -16.95903 -16.53926 -15.78856 -14.44626 -14.29338 -13.67567 -13.65560 -13.26588 -12.81805 -12.65523 -11.79936 -11.73902 -11.47384 -11.23943 -10.93978 -10.73317 -10.54446 -10.04202 -9.82390 -9.70350 -9.20044 -8.54401 -8.33767 -7.43737 -6.05143 -4.03534 1.48066 1.72829 2.30241 3.31658 3.39050 3.44043 3.84206 3.97000 4.45385 4.94531 5.27253 5.29427 5.53954 5.65372 5.73178 6.00014 6.19109 6.33145 6.44285 6.53307 6.74190 6.95521 7.03083 7.27882 7.41820 7.46450 7.71438 7.77677 8.51926 8.99418 9.57364 11.08119 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.044421 B = 0.005918 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.181010 B = 4730.492361 C = 4779.858732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.005 4.005 10 C -0.074 4.074 11 C -0.008 4.008 12 C -0.166 4.166 13 C -0.063 4.063 14 C -0.130 4.130 15 Cl -0.091 7.091 16 C 0.227 3.773 17 N -0.876 5.876 18 C -0.188 4.188 19 H 0.263 0.737 20 H 0.017 0.983 21 H 0.014 0.986 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.129 0.871 25 H 0.127 0.873 26 H 0.397 0.603 27 H 0.400 0.600 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.765 -5.295 1.730 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.042 4.042 10 C -0.111 4.111 11 C -0.009 4.009 12 C -0.186 4.186 13 C -0.082 4.082 14 C -0.161 4.161 15 Cl -0.063 7.063 16 C 0.121 3.879 17 N -0.417 5.417 18 C -0.211 4.211 19 H 0.073 0.927 20 H 0.035 0.965 21 H 0.032 0.968 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.146 0.854 25 H 0.145 0.855 26 H 0.226 0.774 27 H 0.228 0.772 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.745 -5.175 1.703 18.562 hybrid contribution 0.732 0.988 0.329 1.273 sum 18.477 -4.187 2.032 19.054 Atomic orbital electron populations 1.69916 1.06291 1.26901 1.51113 1.25010 0.94710 0.99148 0.94516 0.86800 0.80400 0.83637 0.78630 1.20212 1.21405 1.18949 1.21142 0.89348 0.94542 1.50952 0.90896 1.19540 0.96915 0.91135 0.96655 1.20699 0.87392 1.00615 1.02410 1.20248 0.97537 0.91168 0.91946 1.20863 0.92746 1.06573 0.98406 1.20762 0.94162 0.97466 0.95851 1.20209 0.82941 1.19020 0.93970 1.98297 1.11566 1.97736 1.98653 1.17453 0.91189 0.93980 0.85257 1.42506 1.09043 1.85134 1.04973 1.20507 0.90529 1.10877 0.99158 0.92722 0.96457 0.96753 0.91262 0.91445 0.85356 0.85530 0.77357 0.77176 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.01 15 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 15 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 15 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 15 7 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 15 8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 15 9 C -0.01 -0.12 4.02 -27.88 -0.11 -0.23 15 10 C -0.07 -1.43 5.28 -27.88 -0.15 -1.58 15 11 C -0.01 -0.14 5.13 -104.65 -0.54 -0.67 15 12 C -0.17 -2.57 9.70 -39.55 -0.38 -2.95 15 13 C -0.06 -0.89 9.82 -39.58 -0.39 -1.28 15 14 C -0.13 -1.84 6.34 -39.31 -0.25 -2.09 15 15 Cl -0.09 -1.10 27.60 -51.86 -1.43 -2.53 15 16 C 0.23 3.19 6.75 -83.73 -0.57 2.63 15 17 N -0.88 -9.54 9.05 32.44 0.29 -9.25 15 18 C -0.19 -2.92 9.55 -39.39 -0.38 -3.30 15 19 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 20 H 0.02 0.41 7.20 -51.93 -0.37 0.04 15 21 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 15 22 H 0.07 1.31 8.09 -51.93 -0.42 0.89 15 23 H 0.07 1.28 8.09 -51.93 -0.42 0.86 15 24 H 0.13 1.85 8.06 -52.49 -0.42 1.42 15 25 H 0.13 1.50 8.06 -52.49 -0.42 1.08 15 26 H 0.40 3.86 7.50 -40.82 -0.31 3.56 15 27 H 0.40 3.58 8.84 -40.82 -0.36 3.22 15 28 H 0.13 1.86 8.06 -52.49 -0.42 1.44 15 LS Contribution 258.31 15.07 3.89 3.89 Total: -1.00 -30.56 258.31 -7.46 -38.02 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -3.13 Total: 2.40 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -3.19 Total: -22.67 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 1.07 Total: -36.26 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.43 Total: -2.53 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.56 -7.46 -38.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261067329.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.763 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds