Wall clock time and date at job start Mon Mar 30 2020 03:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00283 * 2 1 4 4 H 1.48493 * 109.47096 * 270.00068 * 3 2 1 5 5 H 1.48505 * 109.46717 * 29.99799 * 3 2 1 6 6 H 1.48499 * 109.47072 * 149.99766 * 3 2 1 7 7 C 1.37877 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00090 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99998 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.47341 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47341 * 179.97438 * 10 9 7 12 12 C 1.38296 * 119.95038 * 270.25237 * 11 10 9 13 13 C 1.38275 * 120.15514 * 180.29819 * 12 11 10 14 14 C 1.38216 * 120.05817 * 359.44562 * 13 12 11 15 15 Cl 1.73598 * 120.04503 * 180.29740 * 14 13 12 16 16 C 1.38987 * 119.90716 * 0.27971 * 14 13 12 17 17 N 1.39753 * 120.07631 * 179.97438 * 16 14 13 18 18 C 1.38115 * 119.95470 * 89.99746 * 11 10 9 19 19 H 0.97011 * 119.99910 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47457 * 59.99404 * 9 7 2 21 21 H 1.08996 * 109.47010 * 299.99627 * 9 7 2 22 22 H 1.08995 * 109.46743 * 59.99587 * 10 9 7 23 23 H 1.09005 * 109.46662 * 299.99847 * 10 9 7 24 24 H 1.07996 * 119.92391 * 0.04535 * 12 11 10 25 25 H 1.08002 * 119.97295 * 179.72704 * 13 12 11 26 26 H 0.96992 * 120.00015 * 359.97438 * 17 16 14 27 27 H 0.96994 * 119.99575 * 180.02562 * 17 16 14 28 28 H 1.07999 * 120.03410 * 359.97438 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5283 -2.6368 -0.0001 12 6 6.2187 -2.6315 -1.1984 13 6 7.6015 -2.6377 -1.2034 14 6 8.2981 -2.6378 -0.0097 15 17 10.0341 -2.6379 -0.0164 16 6 7.6068 -2.6374 1.1961 17 7 8.3077 -2.6380 2.4052 18 6 6.2180 -2.6369 1.1965 19 1 -0.4850 0.8401 -0.0004 20 1 3.8745 -0.6809 0.8904 21 1 3.8751 -0.6798 -0.8895 22 1 3.6583 -3.1503 -0.8903 23 1 3.6577 -3.1507 0.8897 24 1 5.6767 -2.6265 -2.1325 25 1 8.1376 -2.6380 -2.1410 26 1 9.2776 -2.6390 2.4035 27 1 7.8241 -2.6381 3.2460 28 1 5.6779 -2.6365 2.1317 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261067329.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:25 Heat of formation + Delta-G solvation = -22.074144 kcal Electronic energy + Delta-G solvation = -12687.498452 eV Core-core repulsion = 10341.326493 eV Total energy + Delta-G solvation = -2346.171959 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.50387 -37.50199 -36.29362 -35.15789 -33.71231 -30.99213 -29.52093 -26.95169 -23.64557 -23.15722 -21.55163 -19.01088 -17.96730 -17.86132 -16.90764 -16.34568 -15.66621 -14.96306 -14.81802 -14.64918 -14.47018 -14.35338 -13.49356 -13.04511 -12.91683 -12.63079 -12.40853 -11.99726 -11.79330 -11.71101 -11.60377 -11.30496 -11.27079 -10.75347 -9.53874 -8.47219 -8.28529 -6.32303 0.31659 0.60536 1.25306 1.36815 1.37963 1.50370 2.36839 2.80027 2.90991 3.07111 3.85950 4.01565 4.37702 4.48587 4.53925 4.73772 4.75909 4.95668 5.09896 5.12776 5.36797 5.44718 5.48195 5.65603 5.84673 5.91043 6.29104 6.45221 6.75675 6.90317 7.32457 8.88082 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.044421 B = 0.005918 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.181010 B = 4730.492361 C = 4779.858732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.531 4.531 8 H 0.036 0.964 9 C 0.000 4.000 10 C -0.064 4.064 11 C -0.026 4.026 12 C -0.177 4.177 13 C -0.060 4.060 14 C -0.138 4.138 15 Cl -0.071 7.071 16 C 0.227 3.773 17 N -0.864 5.864 18 C -0.198 4.198 19 H 0.266 0.734 20 H 0.017 0.983 21 H 0.017 0.983 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.134 0.866 25 H 0.150 0.850 26 H 0.405 0.595 27 H 0.410 0.590 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.483 -4.638 1.847 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.174 1.174 7 C -0.569 4.569 8 H 0.055 0.945 9 C -0.037 4.037 10 C -0.101 4.101 11 C -0.027 4.027 12 C -0.197 4.197 13 C -0.078 4.078 14 C -0.169 4.169 15 Cl -0.043 7.043 16 C 0.120 3.880 17 N -0.405 5.405 18 C -0.221 4.221 19 H 0.075 0.925 20 H 0.035 0.965 21 H 0.036 0.964 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.152 0.848 25 H 0.167 0.833 26 H 0.235 0.765 27 H 0.240 0.760 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 20.492 -4.536 1.844 21.069 hybrid contribution -0.063 0.686 0.319 0.759 sum 20.429 -3.850 2.163 20.901 Atomic orbital electron populations 1.70065 1.08211 1.28116 1.52742 1.25963 0.95555 1.03346 0.94193 0.85699 0.79406 0.78557 0.79262 1.19111 1.20925 1.17382 1.21507 0.91961 0.93250 1.50218 0.94530 1.19435 0.93658 0.94099 0.96520 1.20458 0.89672 0.97820 1.02198 1.20014 0.95776 0.93641 0.93301 1.20962 0.93590 1.07022 0.98103 1.20986 0.93620 0.96298 0.96942 1.20397 0.84171 1.18337 0.94016 1.98305 1.09745 1.97618 1.98634 1.17477 0.90840 0.93296 0.86378 1.42489 1.09474 1.83950 1.04546 1.20564 0.91372 1.11280 0.98895 0.92493 0.96456 0.96419 0.91527 0.91777 0.84842 0.83274 0.76455 0.75977 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.79 13.96 21.45 0.30 -59.49 15 2 C 0.01 0.37 5.47 84.65 0.46 0.83 15 3 Si 0.95 44.71 27.47 68.60 1.88 46.59 15 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 15 5 H -0.28 -13.08 7.11 99.48 0.71 -12.38 15 6 H -0.25 -11.12 6.54 99.48 0.65 -10.47 15 7 C -0.53 -30.65 9.66 25.60 0.25 -30.40 15 8 H 0.04 2.30 7.99 -2.91 -0.02 2.28 15 9 C 0.00 0.01 4.02 29.85 0.12 0.13 15 10 C -0.06 -2.48 5.28 29.85 0.16 -2.33 15 11 C -0.03 -0.87 5.13 -19.88 -0.10 -0.97 15 12 C -0.18 -5.19 9.70 22.29 0.22 -4.97 15 13 C -0.06 -1.52 9.82 22.27 0.22 -1.30 15 14 C -0.14 -3.50 6.34 22.44 0.14 -3.36 15 15 Cl -0.07 -1.51 27.60 -2.72 -0.08 -1.58 15 16 C 0.23 5.86 6.75 38.21 0.26 6.11 15 17 N -0.86 -16.44 9.05 -51.29 -0.46 -16.90 15 18 C -0.20 -5.85 9.55 22.39 0.21 -5.63 15 19 H 0.27 15.60 8.31 -92.70 -0.77 14.83 15 20 H 0.02 0.80 7.20 -2.39 -0.02 0.79 15 21 H 0.02 0.81 7.57 -2.39 -0.02 0.79 15 22 H 0.07 2.55 8.09 -2.39 -0.02 2.54 15 23 H 0.06 2.46 8.09 -2.38 -0.02 2.44 15 24 H 0.13 3.67 8.06 -2.91 -0.02 3.65 15 25 H 0.15 3.05 8.06 -2.91 -0.02 3.03 15 26 H 0.40 6.64 7.50 -92.71 -0.70 5.95 15 27 H 0.41 6.26 8.84 -92.71 -0.82 5.44 15 28 H 0.13 3.68 8.06 -2.91 -0.02 3.66 15 Total: -1.00 -65.27 258.31 3.19 -62.08 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -0.39 Total: 11.19 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 1.94 Total: -41.89 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -0.16 Total: -76.39 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.58 kcal Total: -65.27 3.19 -62.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261067329.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.002 kcal (2) G-P(sol) polarization free energy of solvation -65.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds