Wall clock time and date at job start Mon Mar 30 2020 02:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 N 1.29122 * 124.88011 * 89.69637 * 10 9 7 12 12 C 1.31937 * 117.09974 * 179.77032 * 11 10 9 13 13 O 1.36124 * 122.80456 * 180.25177 * 12 11 10 14 14 C 1.33987 * 114.39437 * 0.51059 * 12 11 10 15 15 C 1.50699 * 126.03230 * 179.71265 * 14 12 11 16 16 C 1.53003 * 117.50199 * 188.62331 * 15 14 12 17 17 C 1.52999 * 60.00159 * 252.51199 * 16 15 14 18 18 S 1.70957 * 124.88070 * 269.99213 * 10 9 7 19 19 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 21 21 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 22 22 H 0.96700 * 113.99618 * 270.28531 * 13 12 11 23 23 H 1.08999 * 115.55389 * 334.33281 * 15 14 12 24 24 H 1.09006 * 117.49384 * 359.97438 * 16 15 14 25 25 H 1.09001 * 117.50331 * 145.02036 * 16 15 14 26 26 H 1.09006 * 117.49696 * 252.51217 * 17 16 15 27 27 H 1.08996 * 117.51969 * 107.48171 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 7 2.7193 -4.2050 1.0423 12 6 3.5637 -5.2017 0.8572 13 8 4.1437 -5.8776 1.8866 14 6 3.8068 -5.4895 -0.4286 15 6 4.7285 -6.5682 -0.9366 16 6 5.0193 -6.5995 -2.4384 17 6 4.1179 -7.6649 -1.8115 18 16 2.8593 -4.3840 -1.4206 19 1 -0.4850 -0.8400 0.0004 20 1 0.6281 -2.5591 0.8866 21 1 0.6207 -2.5548 -0.8933 22 1 4.9828 -5.4988 2.1825 23 1 5.5351 -6.8538 -0.2614 24 1 4.5436 -5.8400 -3.0590 25 1 6.0175 -6.9055 -2.7515 26 1 4.5231 -8.6720 -1.7120 27 1 3.0495 -7.6064 -2.0193 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261107891.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:17 Heat of formation + Delta-G solvation = 15.199983 kcal Electronic energy + Delta-G solvation = -12809.529877 eV Core-core repulsion = 10467.017952 eV Total energy + Delta-G solvation = -2342.511925 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.77859 -37.14939 -36.28303 -33.65872 -30.23504 -27.92567 -24.39019 -22.60592 -22.40766 -21.70300 -19.45774 -18.01378 -17.21166 -16.91676 -15.60388 -14.75414 -14.34237 -13.88568 -13.65388 -13.10348 -12.44328 -12.15208 -11.98462 -11.62986 -11.45757 -10.98552 -10.83015 -10.76071 -10.67675 -10.32388 -10.15730 -9.05516 -8.90615 -8.71086 -8.48423 -7.91858 -6.51393 -4.24420 1.14200 1.75143 2.23132 3.10995 3.39874 3.42234 3.58327 3.88802 4.15945 4.45240 4.62016 4.79234 4.95475 5.21140 5.27772 5.53998 5.64590 5.77453 5.87366 6.01471 6.04223 6.39619 6.87830 7.01745 7.71148 7.85463 8.25473 8.32837 8.67466 9.45292 10.88098 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.041615 B = 0.007074 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.677077 B = 3957.483482 C = 4142.998825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.076 2.924 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.594 4.594 8 H 0.054 0.946 9 C 0.071 3.929 10 C 0.139 3.861 11 N -0.508 5.508 12 C 0.258 3.742 13 O -0.465 6.465 14 C -0.256 4.256 15 C -0.061 4.061 16 C -0.178 4.178 17 C -0.171 4.171 18 S 0.122 5.878 19 H 0.270 0.730 20 H 0.047 0.953 21 H 0.037 0.963 22 H 0.388 0.612 23 H 0.118 0.882 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.091 -11.233 -4.079 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.903 3.097 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.634 4.634 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.139 4.139 11 N -0.228 5.228 12 C 0.084 3.916 13 O -0.271 6.271 14 C -0.378 4.378 15 C -0.081 4.081 16 C -0.215 4.215 17 C -0.209 4.209 18 S 0.378 5.622 19 H 0.081 0.919 20 H 0.065 0.935 21 H 0.054 0.946 22 H 0.243 0.757 23 H 0.136 0.864 24 H 0.115 0.885 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.119 -9.644 -4.645 13.435 hybrid contribution 1.069 -1.894 1.012 2.398 sum 9.187 -11.538 -3.633 15.190 Atomic orbital electron populations 1.70770 1.06808 1.30738 1.45677 1.25909 0.96425 1.02630 0.93246 0.83435 0.74622 0.74589 0.77005 1.21214 1.21307 1.20728 1.21779 0.94428 0.90044 1.57155 0.92810 1.18311 0.91679 0.88290 0.98699 1.27527 0.99286 0.98382 0.88689 1.65938 1.13696 1.10207 1.32999 1.17777 0.95970 0.92382 0.85481 1.84909 1.40425 1.50915 1.50825 1.24833 1.09988 1.06965 0.96022 1.20007 0.99102 0.95800 0.93239 1.23098 1.01227 1.02403 0.94779 1.23075 0.99727 0.94531 1.03547 1.83783 1.39521 1.25489 1.13420 0.91934 0.93524 0.94555 0.75719 0.86403 0.88485 0.88169 0.88328 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.65 55.43 0.76 -25.92 15 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 15 3 Si 1.08 24.77 29.90 -169.99 -5.08 19.69 15 4 H -0.29 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.59 -16.58 9.09 -34.44 -0.31 -16.89 15 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.07 1.81 4.87 -29.03 -0.14 1.66 15 10 C 0.14 3.18 6.58 -13.42 -0.09 3.09 15 11 N -0.51 -11.68 10.56 -11.95 -0.13 -11.81 15 12 C 0.26 5.04 7.83 -19.00 -0.15 4.89 15 13 O -0.47 -7.76 13.44 -20.14 -0.27 -8.03 15 14 C -0.26 -4.43 6.22 -35.80 -0.22 -4.66 15 15 C -0.06 -0.81 6.07 -91.77 -0.56 -1.37 15 16 C -0.18 -2.01 10.07 -26.73 -0.27 -2.28 15 17 C -0.17 -1.96 10.23 -26.73 -0.27 -2.24 15 18 S 0.12 2.26 22.11 -107.50 -2.38 -0.12 15 19 H 0.27 7.87 7.22 -40.82 -0.29 7.57 15 20 H 0.05 1.26 8.01 -51.93 -0.42 0.84 15 21 H 0.04 0.91 8.00 -51.93 -0.42 0.50 15 22 H 0.39 4.51 9.07 45.56 0.41 4.92 15 23 H 0.12 1.39 8.14 -51.93 -0.42 0.97 15 24 H 0.10 1.17 7.34 -51.93 -0.38 0.79 15 25 H 0.10 0.91 8.14 -51.93 -0.42 0.49 15 26 H 0.10 0.92 8.14 -51.93 -0.42 0.50 15 27 H 0.10 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 257.33 15.07 3.88 3.88 Total: -1.00 -31.66 257.33 -7.32 -38.98 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -1.99 Total: 0.57 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -2.11 Total: -17.24 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.63 Total: -37.73 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.27 Total: -8.03 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.38 Total: -0.12 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.66 -7.32 -38.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107891.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.178 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds