Wall clock time and date at job start Mon Mar 30 2020 02:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 N 1.29122 * 124.88011 * 89.69637 * 10 9 7 12 12 C 1.31937 * 117.09974 * 179.77032 * 11 10 9 13 13 O 1.36124 * 122.80456 * 180.25177 * 12 11 10 14 14 C 1.33987 * 114.39437 * 0.51059 * 12 11 10 15 15 C 1.50699 * 126.03230 * 179.71265 * 14 12 11 16 16 C 1.53003 * 117.50199 * 188.62331 * 15 14 12 17 17 C 1.52999 * 60.00159 * 252.51199 * 16 15 14 18 18 S 1.70957 * 124.88070 * 269.99213 * 10 9 7 19 19 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 21 21 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 22 22 H 0.96700 * 113.99618 * 270.28531 * 13 12 11 23 23 H 1.08999 * 115.55389 * 334.33281 * 15 14 12 24 24 H 1.09006 * 117.49384 * 359.97438 * 16 15 14 25 25 H 1.09001 * 117.50331 * 145.02036 * 16 15 14 26 26 H 1.09006 * 117.49696 * 252.51217 * 17 16 15 27 27 H 1.08996 * 117.51969 * 107.48171 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 7 2.7193 -4.2050 1.0423 12 6 3.5637 -5.2017 0.8572 13 8 4.1437 -5.8776 1.8866 14 6 3.8068 -5.4895 -0.4286 15 6 4.7285 -6.5682 -0.9366 16 6 5.0193 -6.5995 -2.4384 17 6 4.1179 -7.6649 -1.8115 18 16 2.8593 -4.3840 -1.4206 19 1 -0.4850 -0.8400 0.0004 20 1 0.6281 -2.5591 0.8866 21 1 0.6207 -2.5548 -0.8933 22 1 4.9828 -5.4988 2.1825 23 1 5.5351 -6.8538 -0.2614 24 1 4.5436 -5.8400 -3.0590 25 1 6.0175 -6.9055 -2.7515 26 1 4.5231 -8.6720 -1.7120 27 1 3.0495 -7.6064 -2.0193 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261107891.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:16 Heat of formation + Delta-G solvation = -8.444059 kcal Electronic energy + Delta-G solvation = -12810.555160 eV Core-core repulsion = 10467.017952 eV Total energy + Delta-G solvation = -2343.537208 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.27085 -38.23970 -37.65924 -35.71839 -32.01067 -29.54787 -26.30670 -24.32328 -23.33060 -22.94865 -20.96673 -19.46515 -18.99491 -18.55324 -17.00532 -16.05980 -15.71108 -15.53709 -15.41765 -14.73896 -13.96776 -13.85343 -13.60040 -13.10024 -12.73613 -12.51343 -12.46769 -12.22281 -11.94962 -11.91391 -11.41378 -11.02443 -10.64990 -10.50220 -10.19378 -9.43904 -8.73959 -6.49592 -0.38404 0.25417 0.67292 1.51945 1.58479 1.61521 1.80367 2.53537 2.71384 2.92810 3.09372 3.54137 3.73557 3.91796 4.04068 4.28244 4.48056 4.71495 4.74022 4.87811 4.93064 5.03622 5.08319 5.18103 5.73100 6.02613 6.42810 6.50499 6.76679 7.28824 8.64378 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.041615 B = 0.007074 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.677077 B = 3957.483482 C = 4142.998825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.025 4.025 3 Si 1.122 2.878 4 H -0.275 1.275 5 H -0.268 1.268 6 H -0.276 1.276 7 C -0.605 4.605 8 H 0.046 0.954 9 C 0.077 3.923 10 C 0.085 3.915 11 N -0.535 5.535 12 C 0.227 3.773 13 O -0.465 6.465 14 C -0.227 4.227 15 C -0.088 4.088 16 C -0.164 4.164 17 C -0.161 4.161 18 S 0.176 5.824 19 H 0.259 0.741 20 H 0.017 0.983 21 H 0.032 0.968 22 H 0.408 0.592 23 H 0.139 0.861 24 H 0.088 0.912 25 H 0.130 0.870 26 H 0.127 0.873 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.407 -12.423 -5.225 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.224 4.224 3 Si 0.942 3.058 4 H -0.201 1.201 5 H -0.193 1.193 6 H -0.201 1.201 7 C -0.645 4.645 8 H 0.065 0.935 9 C 0.037 3.963 10 C -0.192 4.192 11 N -0.257 5.257 12 C 0.054 3.946 13 O -0.273 6.273 14 C -0.349 4.349 15 C -0.108 4.108 16 C -0.202 4.202 17 C -0.199 4.199 18 S 0.431 5.569 19 H 0.069 0.931 20 H 0.035 0.965 21 H 0.050 0.950 22 H 0.266 0.734 23 H 0.157 0.843 24 H 0.106 0.894 25 H 0.148 0.852 26 H 0.145 0.855 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.442 -10.851 -5.780 16.130 hybrid contribution 0.424 -1.705 1.339 2.209 sum 10.866 -12.555 -4.441 17.188 Atomic orbital electron populations 1.70884 1.07728 1.30160 1.47578 1.27411 0.96505 1.06349 0.92150 0.82880 0.74257 0.70865 0.77809 1.20099 1.19309 1.20073 1.22044 0.94227 0.91480 1.56701 0.93533 1.17972 0.91989 0.89292 0.97035 1.26879 1.01365 0.99736 0.91237 1.65830 1.14305 1.11250 1.34349 1.17859 0.96970 0.92789 0.86955 1.84876 1.41672 1.50581 1.50216 1.25406 1.08248 1.06133 0.95130 1.20296 0.99603 0.95811 0.95108 1.23227 1.02714 1.01758 0.92475 1.23202 0.99464 0.95561 1.01649 1.83415 1.38350 1.24449 1.10685 0.93119 0.96539 0.94993 0.73421 0.84297 0.89393 0.85173 0.85520 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.11 13.65 21.45 0.29 -55.82 15 2 C -0.03 -1.44 5.46 84.65 0.46 -0.98 15 3 Si 1.12 49.66 29.90 68.60 2.05 51.71 15 4 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 15 6 H -0.28 -11.86 7.11 99.48 0.71 -11.16 15 7 C -0.61 -34.67 9.09 25.60 0.23 -34.44 15 8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 15 9 C 0.08 4.15 4.87 29.10 0.14 4.29 15 10 C 0.09 3.99 6.58 88.51 0.58 4.57 15 11 N -0.53 -25.09 10.56 -304.49 -3.21 -28.31 15 12 C 0.23 8.70 7.83 83.71 0.66 9.36 15 13 O -0.47 -14.88 13.44 -94.97 -1.28 -16.16 15 14 C -0.23 -7.44 6.22 24.72 0.15 -7.28 15 15 C -0.09 -2.03 6.07 -11.54 -0.07 -2.10 15 16 C -0.16 -3.02 10.07 30.59 0.31 -2.71 15 17 C -0.16 -3.05 10.23 30.60 0.31 -2.74 15 18 S 0.18 6.35 22.11 -56.49 -1.25 5.10 15 19 H 0.26 15.78 7.22 -92.71 -0.67 15.11 15 20 H 0.02 0.96 8.01 -2.39 -0.02 0.94 15 21 H 0.03 1.69 8.00 -2.39 -0.02 1.67 15 22 H 0.41 8.81 9.07 -74.06 -0.67 8.14 15 23 H 0.14 2.69 8.14 -2.39 -0.02 2.67 15 24 H 0.09 1.80 7.34 -2.38 -0.02 1.79 15 25 H 0.13 1.67 8.14 -2.39 -0.02 1.65 15 26 H 0.13 1.74 8.14 -2.38 -0.02 1.72 15 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 15 Total: -1.00 -69.73 257.33 0.01 -69.72 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 0.62 Total: 5.77 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 2.78 Total: -32.02 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -2.92 Total: -84.13 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -1.28 Total: -16.16 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.71 kcal Atomic # 16 Polarization: 6.35 SS G_CDS: -1.25 Total: 5.10 kcal Total: -69.73 0.01 -69.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107891.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.281 kcal (2) G-P(sol) polarization free energy of solvation -69.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds