Wall clock time and date at job start Mon Mar 30 2020 02:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47149 * 2 1 4 4 H 1.09006 * 109.47095 * 306.30866 * 3 2 1 5 5 C 1.53004 * 109.46788 * 66.30630 * 3 2 1 6 6 C 1.52993 * 109.47115 * 186.30636 * 3 2 1 7 7 H 1.09000 * 109.47064 * 55.51227 * 6 3 2 8 8 C 1.50699 * 109.47451 * 295.50695 * 6 3 2 9 9 H 1.08000 * 119.99655 * 294.72926 * 8 6 3 10 10 C 1.37874 * 120.00007 * 114.72598 * 8 6 3 11 11 N 1.31512 * 120.00118 * 188.20276 * 10 8 6 12 12 Si 1.86798 * 120.00261 * 8.20372 * 10 8 6 13 13 H 1.48507 * 109.47103 * 275.27696 * 12 10 8 14 14 H 1.48501 * 109.47206 * 35.27342 * 12 10 8 15 15 H 1.48498 * 109.47460 * 155.27540 * 12 10 8 16 16 C 1.53006 * 109.47243 * 175.50633 * 6 3 2 17 17 C 1.52999 * 109.47043 * 296.97837 * 16 6 3 18 18 C 1.52999 * 109.47327 * 179.97438 * 17 16 6 19 19 C 1.52999 * 109.47219 * 59.99101 * 18 17 16 20 20 C 1.52999 * 109.47705 * 300.00667 * 19 18 17 21 21 C 1.52990 * 109.47560 * 176.97424 * 16 6 3 22 22 H 1.09006 * 109.47238 * 299.99261 * 1 2 3 23 23 H 1.08999 * 109.47508 * 59.99789 * 1 2 3 24 24 H 1.09007 * 109.47076 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47238 * 240.00739 * 2 1 3 26 26 H 1.08999 * 109.47508 * 120.00211 * 2 1 3 27 27 H 1.09001 * 109.47212 * 296.32308 * 5 3 2 28 28 H 1.09001 * 109.46988 * 56.32335 * 5 3 2 29 29 H 1.09005 * 109.46716 * 176.32350 * 5 3 2 30 30 H 0.96998 * 120.00939 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.46847 * 56.97449 * 16 6 3 32 32 H 1.09000 * 109.46982 * 299.99529 * 17 16 6 33 33 H 1.08999 * 109.47893 * 59.99120 * 17 16 6 34 34 H 1.09000 * 109.46744 * 299.99723 * 18 17 16 35 35 H 1.08999 * 109.47624 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.47130 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.46755 * 60.00628 * 19 18 17 38 38 H 1.08996 * 109.46305 * 300.00060 * 20 19 18 39 39 H 1.08991 * 109.47296 * 180.02562 * 20 19 18 40 40 H 1.09004 * 109.47251 * 300.00063 * 21 16 6 41 41 H 1.09001 * 109.47093 * 59.99580 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5873 1.9880 -0.8282 5 6 1.6634 2.1165 1.3210 6 6 3.5617 1.4454 -0.1584 7 1 3.8342 0.8956 -1.0593 8 6 4.1930 0.7880 1.0417 9 1 4.1037 1.2442 2.0165 10 6 4.8845 -0.3957 0.8951 11 7 5.2962 -1.0527 1.9574 12 14 5.2366 -1.0665 -0.8123 13 1 4.0674 -1.8491 -1.2876 14 1 5.4894 0.0612 -1.7448 15 1 6.4328 -1.9450 -0.7621 16 6 4.0600 2.8877 -0.2709 17 6 3.4782 3.5314 -1.5311 18 6 3.9760 4.9738 -1.6433 19 6 5.5037 4.9812 -1.7255 20 6 6.0855 4.3374 -0.4654 21 6 5.5877 2.8945 -0.3536 22 1 -0.3634 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 0.5780 2.1730 1.4036 28 1 2.0613 1.5344 2.1522 29 1 2.0827 3.1223 1.3481 30 1 5.7830 -1.8853 1.8544 31 1 3.7410 3.4517 0.6056 32 1 3.7972 2.9675 -2.4076 33 1 2.3898 3.5266 -1.4723 34 1 3.6566 5.5376 -0.7668 35 1 3.5619 5.4324 -2.5413 36 1 5.8583 6.0088 -1.8059 37 1 5.8231 4.4175 -2.6021 38 1 5.7661 4.9012 0.4110 39 1 7.1739 4.3431 -0.5238 40 1 6.0022 2.4359 0.5442 41 1 5.9067 2.3304 -1.2300 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261143129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:08 Heat of formation + Delta-G solvation = -53.637517 kcal Electronic energy + Delta-G solvation = -16919.725693 eV Core-core repulsion = 14604.401073 eV Total energy + Delta-G solvation = -2315.324620 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 224.184 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.57856 -35.90000 -32.50695 -31.29720 -30.13519 -28.48167 -26.69558 -24.01987 -22.68169 -21.79321 -20.23629 -19.17266 -18.12400 -16.72646 -14.96791 -14.20850 -14.11491 -13.99069 -13.61742 -13.42607 -12.87754 -12.70359 -12.25986 -12.13776 -11.74387 -11.56453 -11.32369 -11.21219 -10.95457 -10.74204 -10.65454 -10.51373 -10.48869 -10.03350 -9.89527 -9.75304 -9.62831 -9.39480 -9.02567 -8.86675 -8.59366 -8.34574 -5.99258 -3.92917 3.33054 3.41971 3.43809 4.49726 5.21196 5.29063 5.32879 5.38367 5.68598 5.80304 5.83337 5.91330 5.97436 6.06813 6.09098 6.12989 6.17627 6.24952 6.25771 6.34956 6.42326 6.47266 6.53796 6.62593 6.64027 6.72586 6.80279 6.87418 6.90248 6.94494 7.10579 7.23408 7.25479 7.33953 7.39831 7.55003 7.59167 7.92700 8.64387 9.08012 9.66680 11.14337 Molecular weight = 224.18amu Principal moments of inertia in cm(-1) A = 0.020134 B = 0.012753 C = 0.009371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.364328 B = 2195.025193 C = 2987.271139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.078 4.078 4 H 0.040 0.960 5 C -0.133 4.133 6 C 0.017 3.983 7 H 0.030 0.970 8 C -0.488 4.488 9 H 0.074 0.926 10 C 0.073 3.927 11 N -0.905 5.905 12 Si 0.865 3.135 13 H -0.278 1.278 14 H -0.265 1.265 15 H -0.295 1.295 16 C -0.072 4.072 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.105 4.105 22 H 0.051 0.949 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.028 0.972 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.260 0.740 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 8.051 -6.117 10.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.096 4.096 4 H 0.058 0.942 5 C -0.190 4.190 6 C -0.001 4.001 7 H 0.049 0.951 8 C -0.526 4.526 9 H 0.092 0.908 10 C -0.127 4.127 11 N -0.544 5.544 12 Si 0.693 3.307 13 H -0.204 1.204 14 H -0.190 1.190 15 H -0.222 1.222 16 C -0.091 4.091 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.143 4.143 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.095 0.905 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.762 7.879 -6.050 10.622 hybrid contribution 0.300 -0.537 -0.974 1.153 sum -3.461 7.341 -7.025 10.734 Atomic orbital electron populations 1.21848 0.97933 1.00154 1.00757 1.21491 0.93176 0.97987 1.02349 1.21201 0.98235 0.94285 0.95925 0.94216 1.21784 0.97962 1.00003 0.99283 1.19325 0.91272 0.92287 0.97261 0.95139 1.20886 1.31681 1.05809 0.94206 0.90819 1.25003 0.95732 0.96430 0.95562 1.69909 1.39630 1.16251 1.28568 0.87079 0.77874 0.79001 0.86699 1.20383 1.19044 1.22185 1.21228 0.94385 0.98175 0.95315 1.21742 0.99848 0.94704 0.99443 1.21523 0.95552 0.97812 1.00493 1.21521 0.95902 0.99378 0.98633 1.21600 0.99028 0.97989 0.97134 1.21506 0.96452 0.93809 1.02486 0.92990 0.93967 0.94002 0.93762 0.90489 0.95269 0.91548 0.93861 0.92976 0.92135 0.93071 0.92440 0.92515 0.93308 0.93256 0.92636 0.92597 0.93158 0.90248 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.69 37.16 0.36 -2.09 16 2 C -0.11 -2.25 5.09 -26.73 -0.14 -2.39 16 3 C -0.08 -1.53 1.98 -90.62 -0.18 -1.71 16 4 H 0.04 0.73 6.29 -51.93 -0.33 0.40 16 5 C -0.13 -2.51 8.27 37.16 0.31 -2.20 16 6 C 0.02 0.38 1.14 -91.77 -0.10 0.28 16 7 H 0.03 0.71 4.73 -51.93 -0.25 0.47 16 8 C -0.49 -12.62 5.53 -34.44 -0.19 -12.81 16 9 H 0.07 2.10 7.25 -52.49 -0.38 1.72 16 10 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 11 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 12 Si 0.86 21.42 27.00 -169.99 -4.59 16.83 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.27 -6.35 6.60 56.52 0.37 -5.98 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 16 C -0.07 -1.41 1.59 -90.62 -0.14 -1.55 16 17 C -0.12 -2.01 4.93 -26.73 -0.13 -2.15 16 18 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 19 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 20 C -0.12 -1.93 5.93 -26.71 -0.16 -2.09 16 21 C -0.11 -2.06 4.92 -26.71 -0.13 -2.19 16 22 H 0.05 0.81 6.69 -51.93 -0.35 0.46 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 1.74 7.57 -51.93 -0.39 1.35 16 27 H 0.03 0.48 6.78 -51.93 -0.35 0.13 16 28 H 0.07 1.40 6.81 -51.93 -0.35 1.05 16 29 H 0.04 0.78 6.32 -51.93 -0.33 0.45 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.06 1.20 6.34 -51.93 -0.33 0.87 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.93 6.41 -51.93 -0.33 0.60 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.76 7.13 -51.93 -0.37 1.39 16 41 H 0.05 0.96 8.01 -51.93 -0.42 0.55 16 LS Contribution 298.20 15.07 4.49 4.49 Total: -1.00 -27.20 298.20 -7.81 -35.01 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.57 Total: 0.43 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: -0.92 Total: -30.66 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.77 Total: -26.11 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.59 Total: 16.83 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.20 -7.81 -35.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.624 kcal (2) G-P(sol) polarization free energy of solvation -27.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds