Wall clock time and date at job start Mon Mar 30 2020 02:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47149 * 2 1 4 4 H 1.09006 * 109.47095 * 306.30866 * 3 2 1 5 5 C 1.53004 * 109.46788 * 66.30630 * 3 2 1 6 6 C 1.52993 * 109.47115 * 186.30636 * 3 2 1 7 7 H 1.09000 * 109.47064 * 55.51227 * 6 3 2 8 8 C 1.50699 * 109.47451 * 295.50695 * 6 3 2 9 9 H 1.08000 * 119.99655 * 294.72926 * 8 6 3 10 10 C 1.37874 * 120.00007 * 114.72598 * 8 6 3 11 11 N 1.31512 * 120.00118 * 188.20276 * 10 8 6 12 12 Si 1.86798 * 120.00261 * 8.20372 * 10 8 6 13 13 H 1.48507 * 109.47103 * 275.27696 * 12 10 8 14 14 H 1.48501 * 109.47206 * 35.27342 * 12 10 8 15 15 H 1.48498 * 109.47460 * 155.27540 * 12 10 8 16 16 C 1.53006 * 109.47243 * 175.50633 * 6 3 2 17 17 C 1.52999 * 109.47043 * 296.97837 * 16 6 3 18 18 C 1.52999 * 109.47327 * 179.97438 * 17 16 6 19 19 C 1.52999 * 109.47219 * 59.99101 * 18 17 16 20 20 C 1.52999 * 109.47705 * 300.00667 * 19 18 17 21 21 C 1.52990 * 109.47560 * 176.97424 * 16 6 3 22 22 H 1.09006 * 109.47238 * 299.99261 * 1 2 3 23 23 H 1.08999 * 109.47508 * 59.99789 * 1 2 3 24 24 H 1.09007 * 109.47076 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47238 * 240.00739 * 2 1 3 26 26 H 1.08999 * 109.47508 * 120.00211 * 2 1 3 27 27 H 1.09001 * 109.47212 * 296.32308 * 5 3 2 28 28 H 1.09001 * 109.46988 * 56.32335 * 5 3 2 29 29 H 1.09005 * 109.46716 * 176.32350 * 5 3 2 30 30 H 0.96998 * 120.00939 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.46847 * 56.97449 * 16 6 3 32 32 H 1.09000 * 109.46982 * 299.99529 * 17 16 6 33 33 H 1.08999 * 109.47893 * 59.99120 * 17 16 6 34 34 H 1.09000 * 109.46744 * 299.99723 * 18 17 16 35 35 H 1.08999 * 109.47624 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.47130 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.46755 * 60.00628 * 19 18 17 38 38 H 1.08996 * 109.46305 * 300.00060 * 20 19 18 39 39 H 1.08991 * 109.47296 * 180.02562 * 20 19 18 40 40 H 1.09004 * 109.47251 * 300.00063 * 21 16 6 41 41 H 1.09001 * 109.47093 * 59.99580 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5873 1.9880 -0.8282 5 6 1.6634 2.1165 1.3210 6 6 3.5617 1.4454 -0.1584 7 1 3.8342 0.8956 -1.0593 8 6 4.1930 0.7880 1.0417 9 1 4.1037 1.2442 2.0165 10 6 4.8845 -0.3957 0.8951 11 7 5.2962 -1.0527 1.9574 12 14 5.2366 -1.0665 -0.8123 13 1 4.0674 -1.8491 -1.2876 14 1 5.4894 0.0612 -1.7448 15 1 6.4328 -1.9450 -0.7621 16 6 4.0600 2.8877 -0.2709 17 6 3.4782 3.5314 -1.5311 18 6 3.9760 4.9738 -1.6433 19 6 5.5037 4.9812 -1.7255 20 6 6.0855 4.3374 -0.4654 21 6 5.5877 2.8945 -0.3536 22 1 -0.3634 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 0.5780 2.1730 1.4036 28 1 2.0613 1.5344 2.1522 29 1 2.0827 3.1223 1.3481 30 1 5.7830 -1.8853 1.8544 31 1 3.7410 3.4517 0.6056 32 1 3.7972 2.9675 -2.4076 33 1 2.3898 3.5266 -1.4723 34 1 3.6566 5.5376 -0.7668 35 1 3.5619 5.4324 -2.5413 36 1 5.8583 6.0088 -1.8059 37 1 5.8231 4.4175 -2.6021 38 1 5.7661 4.9012 0.4110 39 1 7.1739 4.3431 -0.5238 40 1 6.0022 2.4359 0.5442 41 1 5.9067 2.3304 -1.2300 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:07 Heat of formation + Delta-G solvation = -66.766524 kcal Electronic energy + Delta-G solvation = -16920.295009 eV Core-core repulsion = 14604.401073 eV Total energy + Delta-G solvation = -2315.893936 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 224.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10069 -37.39498 -34.45347 -32.93380 -31.48947 -29.92543 -28.49586 -25.73926 -24.20211 -23.18290 -21.67922 -20.64074 -19.85483 -18.74040 -16.40851 -16.08122 -15.75607 -15.51858 -14.87746 -14.77438 -14.74888 -14.25497 -13.90524 -13.68721 -13.16966 -13.03239 -12.83645 -12.81369 -12.70651 -12.35407 -12.24498 -11.93763 -11.86763 -11.72901 -11.43826 -11.37773 -11.20988 -11.03018 -10.71758 -10.61288 -10.30275 -10.28498 -8.17166 -6.10666 1.31278 1.34870 1.42147 2.40309 3.21242 3.91507 4.05294 4.08797 4.26070 4.29646 4.42042 4.50841 4.55866 4.71036 4.76504 4.79280 4.84421 4.86670 4.92982 4.93845 4.96166 5.11316 5.17860 5.22932 5.28205 5.32645 5.37877 5.39063 5.41209 5.48038 5.52539 5.63128 5.64492 5.67472 5.74213 5.87741 5.96383 5.99212 6.50537 6.93252 7.50496 9.00505 Molecular weight = 224.18amu Principal moments of inertia in cm(-1) A = 0.020134 B = 0.012753 C = 0.009371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.364328 B = 2195.025193 C = 2987.271139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.076 4.076 4 H 0.068 0.932 5 C -0.126 4.126 6 C 0.013 3.987 7 H 0.020 0.980 8 C -0.462 4.462 9 H 0.036 0.964 10 C 0.019 3.981 11 N -0.956 5.956 12 Si 0.914 3.086 13 H -0.271 1.271 14 H -0.251 1.251 15 H -0.301 1.301 16 C -0.070 4.070 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.105 4.105 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.050 0.950 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.050 0.950 30 H 0.257 0.743 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.040 0.960 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.381 10.249 -8.502 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.095 4.095 4 H 0.086 0.914 5 C -0.183 4.183 6 C -0.006 4.006 7 H 0.038 0.962 8 C -0.501 4.501 9 H 0.054 0.946 10 C -0.177 4.177 11 N -0.598 5.598 12 Si 0.741 3.259 13 H -0.197 1.197 14 H -0.175 1.175 15 H -0.228 1.228 16 C -0.088 4.088 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.143 4.143 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.290 10.099 -8.455 14.193 hybrid contribution 0.759 -1.187 -0.151 1.417 sum -4.531 8.912 -8.606 13.191 Atomic orbital electron populations 1.21770 0.94604 1.01365 1.02164 1.21454 0.96183 0.97551 0.99925 1.21177 0.96286 0.94680 0.97346 0.91378 1.21690 0.99674 0.99519 0.97393 1.19383 0.92995 0.93632 0.94553 0.96155 1.21043 1.29955 1.04903 0.94182 0.94614 1.25630 0.96409 0.97216 0.98395 1.70051 1.41997 1.17117 1.30676 0.86263 0.77548 0.78743 0.83326 1.19665 1.17483 1.22834 1.21127 0.94252 0.96389 0.97072 1.21677 1.00355 0.96139 0.97109 1.21512 0.95458 0.96034 1.02024 1.21518 0.95920 1.00614 0.97114 1.21554 0.99684 0.95419 0.98697 1.21440 0.96762 0.96141 0.99915 0.92264 0.91739 0.93074 0.94736 0.94422 0.92438 0.95038 0.93151 0.93370 0.92612 0.93464 0.91319 0.91950 0.90779 0.90638 0.92691 0.92258 0.92346 0.94150 0.94711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.69 71.98 0.70 -3.56 16 2 C -0.11 -4.45 5.09 30.59 0.16 -4.29 16 3 C -0.08 -2.90 1.98 -10.79 -0.02 -2.92 16 4 H 0.07 2.26 6.29 -2.38 -0.02 2.24 16 5 C -0.13 -4.59 8.27 71.98 0.60 -4.00 16 6 C 0.01 0.58 1.14 -11.54 -0.01 0.57 16 7 H 0.02 0.94 4.73 -2.39 -0.01 0.92 16 8 C -0.46 -24.91 5.53 25.60 0.14 -24.76 16 9 H 0.04 2.16 7.25 -2.91 -0.02 2.14 16 10 C 0.02 1.07 5.47 84.65 0.46 1.54 16 11 N -0.96 -59.81 13.96 21.45 0.30 -59.51 16 12 Si 0.91 45.17 27.00 68.60 1.85 47.02 16 13 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.25 -11.65 6.60 99.48 0.66 -10.99 16 15 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 16 C -0.07 -2.64 1.59 -10.80 -0.02 -2.65 16 17 C -0.12 -3.49 4.93 30.59 0.15 -3.34 16 18 C -0.11 -2.78 5.92 30.59 0.18 -2.60 16 19 C -0.11 -2.86 5.92 30.59 0.18 -2.68 16 20 C -0.12 -3.52 5.93 30.61 0.18 -3.34 16 21 C -0.10 -4.10 4.92 30.61 0.15 -3.95 16 22 H 0.06 1.68 6.69 -2.38 -0.02 1.67 16 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.04 1.74 7.57 -2.39 -0.02 1.73 16 27 H 0.06 1.76 6.78 -2.39 -0.02 1.75 16 28 H 0.03 1.34 6.81 -2.39 -0.02 1.33 16 29 H 0.05 1.75 6.32 -2.38 -0.02 1.73 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.06 2.16 6.34 -2.39 -0.02 2.14 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.93 6.41 -2.39 -0.02 1.91 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 1.85 7.13 -2.38 -0.02 1.83 16 41 H 0.03 1.41 8.01 -2.39 -0.02 1.39 16 Total: -1.00 -61.49 298.20 5.91 -55.58 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.91 Total: 12.89 kcal Atomic # 6 Polarization: -58.83 SS G_CDS: 2.85 Total: -55.99 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.30 Total: -59.51 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.85 Total: 47.02 kcal Total: -61.49 5.91 -55.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.185 kcal (2) G-P(sol) polarization free energy of solvation -61.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds