Wall clock time and date at job start Mon Mar 30 2020 02:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31466 * 1 3 3 Si 1.86795 * 120.00207 * 2 1 4 4 H 1.48502 * 109.47120 * 274.64986 * 3 2 1 5 5 H 1.48497 * 109.47330 * 34.64962 * 3 2 1 6 6 H 1.48505 * 109.47243 * 154.65435 * 3 2 1 7 7 C 1.38890 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99944 * 159.66104 * 7 2 1 9 9 N 1.37197 * 119.99961 * 339.65417 * 7 2 1 10 10 C 1.47088 * 125.55587 * 145.85368 * 9 7 2 11 11 C 1.54091 * 103.78246 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.52121 * 118.62889 * 11 10 9 13 13 C 1.53000 * 110.52225 * 241.36888 * 11 10 9 14 14 F 1.39899 * 109.46866 * 176.04356 * 13 11 10 15 15 F 1.39901 * 109.47104 * 296.03968 * 13 11 10 16 16 F 1.39895 * 109.47030 * 56.04350 * 13 11 10 17 17 O 1.45706 * 104.00889 * 0.02562 * 11 10 9 18 18 C 1.33801 * 109.47267 * 359.97438 * 17 11 10 19 19 O 1.21501 * 123.07460 * 179.97438 * 18 17 11 20 20 H 0.96995 * 119.99498 * 0.02562 * 1 2 3 21 21 H 1.09003 * 110.56499 * 61.46267 * 10 9 7 22 22 H 1.08998 * 110.56661 * 298.61417 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 2.3979 2.1031 -1.3955 5 1 1.4988 2.6223 0.7960 6 1 3.5920 1.4137 0.5994 7 6 2.0091 -1.2028 0.0005 8 1 3.0386 -1.2322 -0.3246 9 7 1.3872 -2.3537 0.4142 10 6 1.6282 -3.6990 -0.1296 11 6 0.6789 -4.5994 0.6842 12 1 -0.0451 -5.0829 0.0283 13 6 1.4733 -5.6439 1.4709 14 9 0.5999 -6.3896 2.2698 15 9 2.1328 -6.4968 0.5793 16 9 2.4136 -5.0004 2.2827 17 8 0.0090 -3.6768 1.5914 18 6 0.4606 -2.4354 1.3788 19 8 0.0661 -1.4703 2.0027 20 1 -0.4849 0.8400 -0.0004 21 1 2.6653 -3.9954 0.0276 22 1 1.3753 -3.7346 -1.1893 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261153731.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:35 Heat of formation + Delta-G solvation = -207.081796 kcal Electronic energy + Delta-G solvation = -16259.588236 eV Core-core repulsion = 12786.994744 eV Total energy + Delta-G solvation = -3472.593493 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.99654 -47.53551 -47.43670 -40.47028 -35.89229 -34.57817 -31.91997 -30.26344 -26.08445 -24.49332 -22.27388 -20.99028 -18.65849 -18.49050 -18.08637 -17.02984 -15.99748 -15.61831 -14.65944 -14.40806 -14.28872 -14.23447 -13.89999 -13.63919 -13.60691 -13.42405 -13.13396 -12.91205 -12.40924 -11.76684 -11.49775 -10.96250 -10.76959 -10.33607 -9.98348 -9.12774 -8.94762 -7.61655 -6.30226 -4.04076 2.63661 3.20283 3.26653 3.33307 3.40952 3.72673 4.03624 4.13479 4.27458 4.52916 4.68547 4.80301 5.09916 5.16362 5.76298 5.88303 6.38945 7.44129 8.08793 8.72779 8.88896 9.31607 9.96280 10.78400 Molecular weight = 225.04amu Principal moments of inertia in cm(-1) A = 0.055450 B = 0.009223 C = 0.008679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.842173 B = 3035.170125 C = 3225.271680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.055 3.945 3 Si 0.924 3.076 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.338 4.338 8 H 0.094 0.906 9 N -0.456 5.456 10 C 0.065 3.935 11 C 0.026 3.974 12 H 0.142 0.858 13 C 0.451 3.549 14 F -0.176 7.176 15 F -0.176 7.176 16 F -0.172 7.172 17 O -0.329 6.329 18 C 0.593 3.407 19 O -0.500 6.500 20 H 0.270 0.730 21 H 0.080 0.920 22 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 -9.999 -1.717 10.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.156 4.156 3 Si 0.750 3.250 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.463 4.463 8 H 0.112 0.888 9 N -0.193 5.193 10 C -0.059 4.059 11 C -0.033 4.033 12 H 0.160 0.840 13 C 0.397 3.603 14 F -0.157 7.157 15 F -0.158 7.158 16 F -0.153 7.153 17 O -0.241 6.241 18 C 0.346 3.654 19 O -0.383 6.383 20 H 0.080 0.920 21 H 0.098 0.902 22 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.737 -9.447 -1.201 9.908 hybrid contribution 0.456 0.410 -0.054 0.615 sum 3.193 -9.036 -1.255 9.666 Atomic orbital electron populations 1.69951 1.06518 1.28054 1.40782 1.25334 0.95098 0.99877 0.95323 0.86008 0.79689 0.81411 0.77877 1.20535 1.20626 1.19271 1.18863 0.95332 0.82354 1.49718 0.88793 1.43273 1.39904 1.04934 1.31148 1.22648 0.98331 0.86063 0.98854 1.24647 0.96468 0.91359 0.90845 0.84025 1.20618 0.78839 0.82050 0.78813 1.93196 1.69026 1.78292 1.75231 1.93185 1.82046 1.72424 1.68142 1.93231 1.66554 1.81201 1.74321 1.87319 1.60940 1.19158 1.56727 1.18366 0.83304 0.80903 0.82839 1.90902 1.62570 1.32086 1.52768 0.92021 0.90169 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.21 11.33 55.49 0.63 -23.58 14 2 C 0.06 1.52 4.74 -17.47 -0.08 1.44 14 3 Si 0.92 21.04 29.60 -169.99 -5.03 16.01 14 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 14 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 14 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 14 7 C -0.34 -9.04 9.93 -14.91 -0.15 -9.19 14 8 H 0.09 2.32 7.91 -52.48 -0.42 1.91 14 9 N -0.46 -11.52 3.00 -119.63 -0.36 -11.88 14 10 C 0.07 1.20 6.90 -3.15 -0.02 1.18 14 11 C 0.03 0.45 3.83 -26.16 -0.10 0.35 14 12 H 0.14 1.83 8.14 -51.93 -0.42 1.41 14 13 C 0.45 6.99 2.75 37.16 0.10 7.10 14 14 F -0.18 -2.74 17.30 2.25 0.04 -2.70 14 15 F -0.18 -2.36 17.12 2.25 0.04 -2.32 14 16 F -0.17 -3.03 16.70 2.25 0.04 -2.99 14 17 O -0.33 -7.51 10.74 -37.91 -0.41 -7.91 14 18 C 0.59 16.16 8.21 53.71 0.44 16.60 14 19 O -0.50 -15.74 15.20 -19.11 -0.29 -16.03 14 20 H 0.27 7.55 8.31 -40.82 -0.34 7.21 14 21 H 0.08 1.33 7.42 -51.93 -0.39 0.94 14 22 H 0.09 1.51 8.14 -51.93 -0.42 1.09 14 LS Contribution 218.59 15.07 3.29 3.29 Total: -1.00 -32.78 218.59 -2.64 -35.42 By element: Atomic # 1 Polarization: -4.00 SS G_CDS: -0.78 Total: -4.78 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 0.19 Total: 17.47 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.27 Total: -35.46 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.70 Total: -23.95 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 0.12 Total: -8.01 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -32.78 -2.64 -35.42 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153731.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.661 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds