Wall clock time and date at job start Mon Mar 30 2020 02:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46973 * 2 1 4 4 H 1.08999 * 109.47347 * 50.70636 * 3 2 1 5 5 C 1.53004 * 109.46684 * 290.71163 * 3 2 1 6 6 C 1.52997 * 109.47085 * 170.71373 * 3 2 1 7 7 C 1.50705 * 108.85078 * 305.28986 * 6 3 2 8 8 H 1.07996 * 119.99468 * 158.41864 * 7 6 3 9 9 C 1.37870 * 120.00085 * 338.41993 * 7 6 3 10 10 N 1.31521 * 120.00297 * 327.09417 * 9 7 6 11 11 Si 1.86801 * 120.00022 * 147.09264 * 9 7 6 12 12 H 1.48503 * 109.46792 * 90.00128 * 11 9 7 13 13 H 1.48500 * 109.47244 * 209.99724 * 11 9 7 14 14 H 1.48492 * 109.46985 * 330.00157 * 11 9 7 15 15 C 1.50470 * 108.79998 * 63.80775 * 6 3 2 16 16 C 1.54243 * 108.51992 * 214.87729 * 15 6 3 17 17 C 1.45544 * 112.40261 * 280.00957 * 16 15 6 18 18 C 1.54235 * 112.40670 * 61.93516 * 17 16 15 19 19 C 1.50469 * 108.52497 * 280.01396 * 18 17 16 20 20 C 1.54068 * 112.49894 * 94.15179 * 19 18 17 21 21 H 1.09003 * 109.47096 * 60.00719 * 1 2 3 22 22 H 1.09001 * 109.46724 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47729 * 300.00333 * 1 2 3 24 24 H 1.08995 * 109.47264 * 239.99739 * 2 1 3 25 25 H 1.09003 * 109.47096 * 119.99281 * 2 1 3 26 26 H 1.08997 * 109.47194 * 299.99455 * 5 3 2 27 27 H 1.09000 * 109.47423 * 60.00056 * 5 3 2 28 28 H 1.09000 * 109.46933 * 180.02562 * 5 3 2 29 29 H 0.96991 * 120.00258 * 177.02856 * 10 9 7 30 30 H 1.08998 * 109.62633 * 334.58364 * 15 6 3 31 31 H 1.08991 * 109.62943 * 95.16555 * 15 6 3 32 32 H 1.08996 * 108.89571 * 159.25923 * 16 15 6 33 33 H 1.09001 * 108.89736 * 40.76055 * 16 15 6 34 34 H 1.09005 * 108.89703 * 301.18144 * 17 16 15 35 35 H 1.09005 * 108.89697 * 182.69284 * 17 16 15 36 36 H 1.09005 * 109.62567 * 39.72186 * 18 17 16 37 37 H 1.09005 * 109.62782 * 160.29906 * 18 17 16 38 38 H 1.09006 * 108.87359 * 214.92587 * 19 18 17 39 39 H 1.08997 * 108.87864 * 333.36779 * 19 18 17 40 40 H 1.09000 * 108.81063 * 79.14197 * 20 19 18 41 41 H 1.08999 * 108.81224 * 197.53366 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5475 2.0020 0.7953 5 6 1.7289 2.0933 -1.3493 6 6 3.5521 1.4489 0.2328 7 6 3.8529 0.6907 1.5000 8 1 4.8388 0.2812 1.6631 9 6 2.8695 0.5200 2.4511 10 7 1.9597 1.4525 2.6312 11 14 2.8291 -1.0360 3.4840 12 1 3.6366 -0.8346 4.7139 13 1 1.4258 -1.3453 3.8584 14 1 3.3929 -2.1646 2.7009 15 6 4.2233 0.7543 -0.9211 16 6 5.4531 -0.0075 -0.3860 17 6 6.6008 0.8643 -0.1837 18 6 6.3278 1.9619 0.8648 19 6 5.5449 3.0664 0.2080 20 6 4.0246 2.9058 0.3995 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 2.2214 1.5339 -2.1447 27 1 0.6516 2.0888 -1.5152 28 1 2.0926 3.1208 -1.3495 29 1 1.2429 1.3139 3.2697 30 1 3.5280 0.0512 -1.3797 31 1 4.5415 1.4920 -1.6575 32 1 5.7230 -0.7868 -1.0986 33 1 5.1931 -0.4749 0.5638 34 1 6.8561 1.3375 -1.1319 35 1 7.4472 0.2625 0.1474 36 1 5.7505 1.5446 1.6899 37 1 7.2735 2.3552 1.2379 38 1 5.8552 4.0203 0.6344 39 1 5.7676 3.0701 -0.8590 40 1 3.7580 3.2497 1.3988 41 1 3.5104 3.5266 -0.3343 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261161089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:57 Heat of formation + Delta-G solvation = -11.335333 kcal Electronic energy + Delta-G solvation = -17712.301120 eV Core-core repulsion = 15398.810860 eV Total energy + Delta-G solvation = -2313.490260 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 224.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77631 -36.89248 -33.91806 -32.92380 -32.23696 -29.39966 -27.53006 -25.51516 -24.94523 -23.71802 -21.32524 -20.72139 -19.26971 -17.12632 -16.66493 -16.40402 -15.75748 -15.34789 -14.99359 -14.49176 -14.14296 -14.07323 -13.74197 -13.40185 -13.30333 -12.86572 -12.75943 -12.59746 -12.53486 -12.23092 -12.05591 -11.82887 -11.78202 -11.35015 -11.11452 -10.91349 -10.85864 -10.67235 -10.50362 -10.25342 -9.96286 -9.38732 -7.94573 -5.73276 1.40593 1.51240 1.57110 2.58032 3.23363 4.18075 4.24743 4.38558 4.46623 4.49873 4.60652 4.75519 4.82103 4.86072 4.89900 4.94409 5.01861 5.05454 5.07281 5.17582 5.18386 5.27162 5.37057 5.45662 5.48384 5.54877 5.57767 5.65785 5.72924 5.74664 5.84004 5.88495 5.91694 6.04996 6.08209 6.17172 6.39068 6.61257 6.77999 7.23370 7.75533 9.04797 Molecular weight = 224.18amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.015424 C = 0.011756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.620981 B = 1814.959273 C = 2381.280035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.086 4.086 4 H 0.085 0.915 5 C -0.142 4.142 6 C 0.074 3.926 7 C -0.522 4.522 8 H 0.081 0.919 9 C 0.063 3.937 10 N -0.867 5.867 11 Si 0.872 3.128 12 H -0.292 1.292 13 H -0.293 1.293 14 H -0.271 1.271 15 C -0.088 4.088 16 C -0.135 4.135 17 C -0.096 4.096 18 C -0.135 4.135 19 C -0.099 4.099 20 C -0.092 4.092 21 H 0.056 0.944 22 H 0.046 0.954 23 H 0.033 0.967 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.251 0.749 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.040 0.960 39 H 0.050 0.950 40 H 0.025 0.975 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.707 -0.382 -6.223 6.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C -0.105 4.105 4 H 0.103 0.897 5 C -0.199 4.199 6 C 0.073 3.927 7 C -0.558 4.558 8 H 0.098 0.902 9 C -0.138 4.138 10 N -0.504 5.504 11 Si 0.699 3.301 12 H -0.219 1.219 13 H -0.220 1.220 14 H -0.196 1.196 15 C -0.126 4.126 16 C -0.172 4.172 17 C -0.134 4.134 18 C -0.172 4.172 19 C -0.136 4.136 20 C -0.130 4.130 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.559 -0.301 -6.097 6.619 hybrid contribution -0.367 -0.793 0.972 1.307 sum 2.192 -1.095 -5.125 5.681 Atomic orbital electron populations 1.21743 0.97296 1.00142 1.00665 1.21532 0.94109 0.98352 1.00289 1.21261 0.98026 0.95276 0.95901 0.89749 1.21962 0.99716 0.99849 0.98384 1.17844 0.91386 0.90743 0.92695 1.21709 0.97429 1.34254 1.02411 0.90182 1.25050 0.96816 0.95903 0.96069 1.70282 1.16092 1.30255 1.33767 0.86991 0.76590 0.86529 0.79992 1.21904 1.21963 1.19642 1.21315 0.96284 0.97776 0.97206 1.20750 0.95535 0.98408 1.02503 1.20288 0.97565 0.97258 0.98241 1.21645 0.98786 0.96457 1.00314 1.21139 0.95750 0.97434 0.99298 1.21984 0.94112 0.98655 0.98259 0.92517 0.93528 0.94748 0.93935 0.92738 0.93394 0.93847 0.93922 0.93911 0.93578 0.94374 0.94241 0.90093 0.93198 0.93007 0.89745 0.93216 0.94094 0.93144 0.95582 0.95471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 9.73 71.98 0.70 -4.57 16 2 C -0.11 -4.42 4.47 30.59 0.14 -4.29 16 3 C -0.09 -3.70 1.03 -10.79 -0.01 -3.71 16 4 H 0.08 4.22 5.58 -2.39 -0.01 4.21 16 5 C -0.14 -5.24 8.49 71.98 0.61 -4.63 16 6 C 0.07 3.17 0.18 -53.38 -0.01 3.16 16 7 C -0.52 -24.92 4.36 25.60 0.11 -24.80 16 8 H 0.08 3.85 3.65 -2.91 -0.01 3.84 16 9 C 0.06 3.14 3.06 84.65 0.26 3.40 16 10 N -0.87 -45.24 10.66 21.45 0.23 -45.01 16 11 Si 0.87 40.62 28.55 68.60 1.96 42.58 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 15 C -0.09 -3.41 3.63 30.20 0.11 -3.31 16 16 C -0.14 -4.98 5.14 28.74 0.15 -4.83 16 17 C -0.10 -3.22 5.24 28.74 0.15 -3.07 16 18 C -0.13 -4.93 5.58 30.19 0.17 -4.76 16 19 C -0.10 -3.64 5.31 30.14 0.16 -3.48 16 20 C -0.09 -3.94 4.78 31.32 0.15 -3.79 16 21 H 0.06 1.89 6.72 -2.39 -0.02 1.88 16 22 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.04 1.68 6.46 -2.39 -0.02 1.66 16 25 H 0.05 2.55 4.09 -2.39 -0.01 2.54 16 26 H 0.05 1.65 6.77 -2.39 -0.02 1.63 16 27 H 0.04 1.48 6.72 -2.39 -0.02 1.47 16 28 H 0.04 1.55 6.27 -2.39 -0.01 1.53 16 29 H 0.25 12.94 8.31 -92.72 -0.77 12.17 16 30 H 0.05 1.78 5.30 -2.39 -0.01 1.77 16 31 H 0.04 1.40 6.98 -2.39 -0.02 1.38 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 3.38 4.66 -2.39 -0.01 3.37 16 34 H 0.05 1.55 7.47 -2.38 -0.02 1.53 16 35 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.08 3.63 4.36 -2.38 -0.01 3.62 16 37 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.05 1.72 6.63 -2.39 -0.02 1.71 16 40 H 0.03 1.26 7.97 -2.39 -0.02 1.24 16 41 H 0.03 1.11 5.96 -2.39 -0.01 1.09 16 Total: -1.00 -49.68 274.29 5.88 -43.80 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 1.00 Total: 17.30 kcal Atomic # 6 Polarization: -61.36 SS G_CDS: 2.68 Total: -58.68 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.23 Total: -45.01 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 1.96 Total: 42.58 kcal Total: -49.68 5.88 -43.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.467 kcal (2) G-P(sol) polarization free energy of solvation -49.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds