Wall clock time and date at job start Mon Mar 30 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.38259 * 119.99333 * 259.99806 * 13 10 9 15 15 C 1.38220 * 120.02719 * 180.02562 * 14 13 10 16 16 C 1.38231 * 120.01453 * 359.97307 * 15 14 13 17 17 C 1.38340 * 119.98589 * 0.02562 * 16 15 14 18 18 Cl 1.73595 * 120.01141 * 180.02562 * 17 16 15 19 19 C 1.38200 * 119.99480 * 79.72087 * 13 10 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.00899 * 110.99551 * 176.04512 * 12 10 9 24 24 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 25 25 H 1.08004 * 119.98623 * 359.97438 * 14 13 10 26 26 H 1.07998 * 119.99346 * 180.02562 * 15 14 13 27 27 H 1.08001 * 120.01113 * 180.02562 * 16 15 14 28 28 H 1.07999 * 120.00074 * 0.02562 * 19 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 7 3.0083 -3.6484 -1.2657 13 6 1.4957 -4.9642 0.1075 14 6 1.4099 -5.6040 1.3302 15 6 0.7231 -6.7985 1.4391 16 6 0.1212 -7.3540 0.3256 17 6 0.2066 -6.7144 -0.8980 18 17 -0.5497 -7.4111 -2.2967 19 6 0.8894 -5.5157 -1.0052 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 3.7159 -4.3676 -1.2664 24 1 2.3960 -3.7427 -2.0622 25 1 1.8804 -5.1706 2.2004 26 1 0.6561 -7.2976 2.3945 27 1 -0.4158 -8.2872 0.4108 28 1 0.9531 -5.0137 -1.9594 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261203647.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:18 Heat of formation + Delta-G solvation = 4.325736 kcal Electronic energy + Delta-G solvation = -12863.434112 eV Core-core repulsion = 10518.406938 eV Total energy + Delta-G solvation = -2345.027175 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.35941 -36.50942 -35.25228 -32.46688 -30.58396 -29.90387 -28.24380 -24.50395 -22.53852 -22.05014 -19.74443 -17.07403 -16.15548 -15.57943 -15.25625 -14.73466 -14.32047 -13.72798 -13.49675 -13.36872 -12.74893 -12.22044 -11.54984 -11.47041 -11.30683 -11.12732 -10.84915 -10.70805 -10.56302 -10.24759 -9.67772 -9.12354 -8.67836 -8.39022 -8.29203 -7.99334 -5.92115 -3.91422 1.34076 1.45697 2.22970 3.39834 3.43590 3.47173 3.81921 4.53612 4.93296 4.99057 5.24989 5.30640 5.45225 5.51804 5.59376 5.79003 6.02363 6.19995 6.36966 6.47751 6.66083 6.82718 6.99515 7.50691 7.67494 7.94009 8.07296 8.13262 8.50346 9.14356 9.70682 11.19565 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039892 B = 0.006331 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.719092 B = 4421.924970 C = 4614.041471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.051 3.949 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.496 4.496 8 H 0.062 0.938 9 C 0.037 3.963 10 C 0.131 3.869 11 H 0.082 0.918 12 N -0.821 5.821 13 C -0.084 4.084 14 C -0.112 4.112 15 C -0.108 4.108 16 C -0.128 4.128 17 C -0.031 4.031 18 Cl -0.082 7.082 19 C -0.111 4.111 20 H 0.259 0.741 21 H 0.020 0.980 22 H 0.017 0.983 23 H 0.323 0.677 24 H 0.334 0.666 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 -14.520 0.000 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.149 4.149 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.535 4.535 8 H 0.080 0.920 9 C 0.000 4.000 10 C 0.019 3.981 11 H 0.100 0.900 12 N -0.347 5.347 13 C -0.087 4.087 14 C -0.131 4.131 15 C -0.127 4.127 16 C -0.147 4.147 17 C -0.057 4.057 18 Cl -0.054 7.054 19 C -0.130 4.130 20 H 0.069 0.931 21 H 0.039 0.961 22 H 0.035 0.965 23 H 0.134 0.866 24 H 0.148 0.852 25 H 0.146 0.854 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.221 -13.692 0.071 13.746 hybrid contribution -0.207 -0.140 -0.273 0.370 sum 1.014 -13.832 -0.202 13.870 Atomic orbital electron populations 1.69964 1.06030 1.26531 1.51700 1.25023 0.94805 0.99200 0.95831 0.86632 0.79447 0.83158 0.78546 1.20298 1.21608 1.20424 1.21106 0.93343 0.89998 1.49034 0.91952 1.19144 0.92825 0.90657 0.97412 1.20885 0.94830 0.89854 0.92549 0.90041 1.58852 1.17819 1.54183 1.03895 1.21452 0.96807 0.97918 0.92479 1.21229 0.99269 0.94907 0.97678 1.21074 0.97573 0.96095 0.97909 1.20917 1.01810 1.00728 0.91237 1.20884 1.00410 0.96076 0.88344 1.98347 1.80957 1.84211 1.41857 1.20878 0.98016 0.94035 1.00025 0.93146 0.96136 0.96465 0.86631 0.85198 0.85394 0.85502 0.85564 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.47 15 2 C 0.05 1.47 5.46 -17.82 -0.10 1.38 15 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 15 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 7 C -0.50 -13.85 8.84 -34.44 -0.30 -14.15 15 8 H 0.06 1.73 7.74 -52.49 -0.41 1.32 15 9 C 0.04 0.93 4.60 -27.88 -0.13 0.80 15 10 C 0.13 2.55 2.93 -68.86 -0.20 2.35 15 11 H 0.08 1.59 8.00 -51.93 -0.42 1.18 15 12 N -0.82 -14.78 8.78 -5.65 -0.05 -14.83 15 13 C -0.08 -1.42 4.94 -104.63 -0.52 -1.93 15 14 C -0.11 -1.67 9.67 -39.58 -0.38 -2.06 15 15 C -0.11 -1.40 10.05 -39.59 -0.40 -1.80 15 16 C -0.13 -1.69 9.83 -39.55 -0.39 -2.08 15 17 C -0.03 -0.45 6.32 -39.50 -0.25 -0.70 15 18 Cl -0.08 -1.10 28.96 -51.86 -1.50 -2.61 15 19 C -0.11 -1.78 9.08 -39.55 -0.36 -2.14 15 20 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 21 H 0.02 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 23 H 0.32 4.87 9.06 -39.29 -0.36 4.51 15 24 H 0.33 5.82 7.35 -39.29 -0.29 5.53 15 25 H 0.13 1.74 8.04 -52.48 -0.42 1.32 15 26 H 0.13 1.26 8.06 -52.49 -0.42 0.84 15 27 H 0.13 1.38 8.06 -52.49 -0.42 0.95 15 28 H 0.13 2.06 6.67 -52.49 -0.35 1.71 15 LS Contribution 261.17 15.07 3.94 3.94 Total: -1.00 -30.07 261.17 -7.99 -38.06 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -3.06 Total: 5.28 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -3.03 Total: -20.34 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.69 Total: -41.30 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.61 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.07 -7.99 -38.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261203647.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.387 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds