Wall clock time and date at job start Mon Mar 30 2020 03:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.38259 * 119.99333 * 259.99806 * 13 10 9 15 15 C 1.38220 * 120.02719 * 180.02562 * 14 13 10 16 16 C 1.38231 * 120.01453 * 359.97307 * 15 14 13 17 17 C 1.38340 * 119.98589 * 0.02562 * 16 15 14 18 18 Cl 1.73595 * 120.01141 * 180.02562 * 17 16 15 19 19 C 1.38200 * 119.99480 * 79.72087 * 13 10 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.00899 * 110.99551 * 176.04512 * 12 10 9 24 24 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 25 25 H 1.08004 * 119.98623 * 359.97438 * 14 13 10 26 26 H 1.07998 * 119.99346 * 180.02562 * 15 14 13 27 27 H 1.08001 * 120.01113 * 180.02562 * 16 15 14 28 28 H 1.07999 * 120.00074 * 0.02562 * 19 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 7 3.0083 -3.6484 -1.2657 13 6 1.4957 -4.9642 0.1075 14 6 1.4099 -5.6040 1.3302 15 6 0.7231 -6.7985 1.4391 16 6 0.1212 -7.3540 0.3256 17 6 0.2066 -6.7144 -0.8980 18 17 -0.5497 -7.4111 -2.2967 19 6 0.8894 -5.5157 -1.0052 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 3.7159 -4.3676 -1.2664 24 1 2.3960 -3.7427 -2.0622 25 1 1.8804 -5.1706 2.2004 26 1 0.6561 -7.2976 2.3945 27 1 -0.4158 -8.2872 0.4108 28 1 0.9531 -5.0137 -1.9594 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261203647.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:17 Heat of formation + Delta-G solvation = -14.527339 kcal Electronic energy + Delta-G solvation = -12864.251643 eV Core-core repulsion = 10518.406938 eV Total energy + Delta-G solvation = -2345.844705 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.56219 -37.68524 -36.71180 -34.53415 -31.73043 -31.14737 -30.17585 -26.27752 -23.94588 -23.40024 -21.24556 -18.64698 -17.84926 -17.05342 -16.52035 -16.37587 -15.91572 -15.13360 -14.59964 -14.57554 -14.37223 -14.10774 -13.20017 -12.84459 -12.79641 -12.55051 -12.48152 -12.35080 -12.04867 -11.88610 -11.45008 -11.23695 -10.51126 -9.88238 -9.63412 -9.40434 -8.11841 -6.18496 0.19688 0.30965 1.12068 1.43152 1.46210 1.53736 2.46720 2.67230 3.21453 3.77025 3.87862 3.90413 4.14734 4.36423 4.39758 4.53565 4.79230 4.86960 5.00638 5.23500 5.35698 5.44915 5.50605 5.71003 5.85980 5.86329 6.28169 6.47689 6.78461 6.95663 7.48346 8.99829 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039892 B = 0.006331 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.719092 B = 4421.924970 C = 4614.041471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.005 4.005 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.045 3.955 10 C 0.145 3.855 11 H 0.080 0.920 12 N -0.829 5.829 13 C -0.104 4.104 14 C -0.120 4.120 15 C -0.099 4.099 16 C -0.121 4.121 17 C -0.041 4.041 18 Cl -0.073 7.073 19 C -0.123 4.123 20 H 0.260 0.740 21 H -0.007 1.007 22 H -0.012 1.012 23 H 0.342 0.658 24 H 0.336 0.664 25 H 0.138 0.862 26 H 0.164 0.836 27 H 0.155 0.845 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.847 -15.655 0.631 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.201 4.201 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.008 3.992 10 C 0.033 3.967 11 H 0.098 0.902 12 N -0.358 5.358 13 C -0.107 4.107 14 C -0.139 4.139 15 C -0.117 4.117 16 C -0.140 4.140 17 C -0.068 4.068 18 Cl -0.044 7.044 19 C -0.142 4.142 20 H 0.068 0.932 21 H 0.011 0.989 22 H 0.006 0.994 23 H 0.155 0.845 24 H 0.150 0.850 25 H 0.156 0.844 26 H 0.182 0.818 27 H 0.173 0.827 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.879 -14.847 0.701 14.982 hybrid contribution -0.442 0.124 -0.476 0.662 sum 1.437 -14.723 0.225 14.795 Atomic orbital electron populations 1.70103 1.07683 1.27393 1.52939 1.25909 0.95639 1.03056 0.95542 0.85557 0.78176 0.78598 0.78984 1.19671 1.21344 1.19236 1.21479 0.93513 0.91358 1.48271 0.91955 1.18943 0.93220 0.92488 0.94597 1.20408 0.93740 0.89376 0.93146 0.90205 1.58742 1.18259 1.55374 1.03400 1.21143 0.98276 0.97379 0.93896 1.21457 0.99583 0.95767 0.97094 1.21463 0.95823 0.95017 0.99410 1.21326 1.00871 1.01334 0.90441 1.21019 1.00434 0.95844 0.89472 1.98348 1.80688 1.83872 1.41539 1.20860 0.98846 0.94939 0.99593 0.93171 0.98877 0.99366 0.84538 0.84996 0.84407 0.81804 0.82715 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.90 13.29 21.45 0.28 -57.61 15 2 C -0.01 -0.30 5.46 84.66 0.46 0.17 15 3 Si 0.96 45.30 29.54 68.60 2.03 47.33 15 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 15 5 H -0.29 -13.34 7.11 99.48 0.71 -12.64 15 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 7 C -0.51 -28.80 8.84 25.60 0.23 -28.57 15 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 15 9 C 0.04 2.33 4.60 29.85 0.14 2.47 15 10 C 0.15 5.74 2.93 44.16 0.13 5.87 15 11 H 0.08 3.14 8.00 -2.39 -0.02 3.12 15 12 N -0.83 -29.94 8.78 -171.80 -1.51 -31.45 15 13 C -0.10 -3.51 4.94 -19.87 -0.10 -3.61 15 14 C -0.12 -3.41 9.67 22.27 0.22 -3.20 15 15 C -0.10 -2.25 10.05 22.26 0.22 -2.03 15 16 C -0.12 -2.84 9.83 22.29 0.22 -2.62 15 17 C -0.04 -1.15 6.32 22.32 0.14 -1.01 15 18 Cl -0.07 -1.86 28.96 -2.72 -0.08 -1.94 15 19 C -0.12 -3.96 9.08 22.29 0.20 -3.76 15 20 H 0.26 15.18 8.31 -92.70 -0.77 14.41 15 21 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 15 22 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 15 23 H 0.34 10.10 9.06 -89.69 -0.81 9.29 15 24 H 0.34 11.93 7.35 -89.69 -0.66 11.27 15 25 H 0.14 3.54 8.04 -2.91 -0.02 3.52 15 26 H 0.16 2.50 8.06 -2.91 -0.02 2.48 15 27 H 0.16 2.73 8.06 -2.91 -0.02 2.71 15 28 H 0.12 3.97 6.67 -2.91 -0.02 3.95 15 Total: -1.00 -64.91 261.17 2.29 -62.62 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -0.29 Total: 17.34 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 1.86 Total: -36.28 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -1.22 Total: -89.06 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.94 kcal Total: -64.91 2.29 -62.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261203647.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.090 kcal (2) G-P(sol) polarization free energy of solvation -64.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds