Wall clock time and date at job start Mon Mar 30 2020 03:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38609 * 120.42071 * 2 1 4 4 C 1.38670 * 118.43685 * 180.02562 * 3 2 1 5 5 C 1.38189 * 119.19059 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.61083 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47167 * 154.96979 * 6 5 4 8 8 C 1.53002 * 109.46851 * 34.97546 * 6 5 4 9 9 C 1.50691 * 109.46954 * 274.97490 * 6 5 4 10 10 H 1.07996 * 120.00385 * 359.97438 * 9 6 5 11 11 C 1.37882 * 120.00079 * 179.97438 * 9 6 5 12 12 N 1.31519 * 119.99693 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 120.00153 * 180.02562 * 11 9 6 14 14 H 1.48492 * 109.47057 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46969 * 120.00245 * 13 11 9 16 16 H 1.48510 * 109.46767 * 239.99795 * 13 11 9 17 17 N 1.31878 * 120.78128 * 359.97438 * 5 4 3 18 18 C 1.31984 * 121.70616 * 0.02562 * 17 5 4 19 19 Cl 1.73599 * 119.63308 * 180.02562 * 18 17 5 20 20 H 1.08993 * 109.47356 * 269.97828 * 1 2 3 21 21 H 1.08994 * 109.46843 * 29.99100 * 1 2 3 22 22 H 1.09006 * 109.46443 * 149.98282 * 1 2 3 23 23 H 1.08006 * 120.78306 * 0.03783 * 3 2 1 24 24 H 1.07994 * 120.40486 * 180.02562 * 4 3 2 25 25 H 1.08999 * 109.46774 * 179.97438 * 8 6 5 26 26 H 1.08995 * 109.47149 * 299.99998 * 8 6 5 27 27 H 1.09002 * 109.47310 * 60.00114 * 8 6 5 28 28 H 0.96996 * 119.99718 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2089 1.1953 0.0000 4 6 3.5948 1.1473 -0.0005 5 6 4.2266 -0.0817 -0.0016 6 6 5.7323 -0.1450 -0.0016 7 1 6.0562 -1.0909 0.4324 8 6 6.2913 1.0139 0.8263 9 6 6.2393 -0.0417 -1.4169 10 1 5.5411 0.0592 -2.2347 11 6 7.5946 -0.0760 -1.6679 12 7 8.4449 -0.1993 -0.6721 13 14 8.2232 0.0528 -3.4223 14 1 7.0727 0.1822 -4.3520 15 1 9.0986 1.2457 -3.5481 16 1 8.9982 -1.1679 -3.7612 17 7 3.5275 -1.2000 -0.0016 18 6 2.2077 -1.1929 -0.0011 19 17 1.3413 -2.6973 -0.0004 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3633 0.8900 -0.5137 22 1 -0.3632 -0.8899 -0.5141 23 1 1.6887 2.1418 0.0006 24 1 4.1733 2.0592 -0.0001 25 1 7.3803 0.9679 0.8267 26 1 5.9674 1.9598 0.3924 27 1 5.9245 0.9392 1.8501 28 1 9.3983 -0.2230 -0.8486 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218040.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:48 Heat of formation + Delta-G solvation = 10.951705 kcal Electronic energy + Delta-G solvation = -13070.329042 eV Core-core repulsion = 10725.589191 eV Total energy + Delta-G solvation = -2344.739851 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.85175 -36.35355 -34.76447 -32.97556 -31.56321 -29.84912 -26.37700 -25.23785 -22.94410 -22.44247 -20.02745 -16.65717 -16.20484 -15.89727 -14.78924 -14.54777 -14.31595 -13.36295 -12.95653 -12.69388 -12.46119 -12.35527 -11.57061 -11.51756 -11.22436 -10.98359 -10.83451 -10.71434 -10.40535 -10.16058 -9.95116 -9.37547 -9.07367 -8.83587 -8.40782 -8.02640 -6.06748 -4.13721 1.50067 1.70468 2.22826 3.27393 3.35478 3.40173 4.19990 4.43539 4.91078 5.07739 5.22675 5.29389 5.41158 5.66674 5.70144 5.84871 6.00028 6.25726 6.46064 6.59497 6.77495 6.83833 7.05273 7.26039 7.60689 7.77375 7.99141 8.26348 8.54064 8.86853 9.50468 10.99316 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035798 B = 0.007588 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.977273 B = 3689.058310 C = 3906.019126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.156 4.156 3 C -0.071 4.071 4 C -0.166 4.166 5 C 0.194 3.806 6 C 0.081 3.919 7 H 0.051 0.949 8 C -0.136 4.136 9 C -0.504 4.504 10 H 0.056 0.944 11 C 0.064 3.936 12 N -0.887 5.887 13 Si 0.897 3.103 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.479 5.479 18 C 0.175 3.825 19 Cl -0.054 7.054 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.134 0.866 24 H 0.143 0.857 25 H 0.092 0.908 26 H 0.033 0.967 27 H 0.012 0.988 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.429 2.398 2.042 12.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.159 4.159 3 C -0.097 4.097 4 C -0.186 4.186 5 C 0.057 3.943 6 C 0.062 3.938 7 H 0.069 0.931 8 C -0.194 4.194 9 C -0.543 4.543 10 H 0.074 0.926 11 C -0.137 4.137 12 N -0.526 5.526 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 N -0.189 5.189 18 C 0.010 3.990 19 Cl -0.026 7.026 20 H 0.087 0.913 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.152 0.848 24 H 0.160 0.840 25 H 0.110 0.890 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.876 1.441 2.077 12.142 hybrid contribution -0.102 0.635 -0.982 1.174 sum -11.978 2.076 1.095 12.205 Atomic orbital electron populations 1.20691 0.90294 1.02952 1.02300 1.20317 0.97230 0.92111 1.06233 1.21383 0.94213 0.97040 0.97080 1.22204 0.94218 1.00468 1.01680 1.22208 0.98787 0.85851 0.87414 1.17918 0.81416 0.97218 0.97229 0.93126 1.21887 1.04917 0.97427 0.95175 1.20916 0.91663 1.50853 0.90841 0.92617 1.24912 0.96682 0.94834 0.97295 1.69885 1.02332 1.49892 1.30478 0.86449 0.78843 0.77693 0.84544 1.19788 1.20899 1.20861 1.66953 1.05439 1.33017 1.13455 1.21462 0.90388 0.86022 1.01104 1.98340 1.74000 1.33618 1.96664 0.91280 0.91532 0.91143 0.84799 0.83952 0.88985 0.94847 0.96924 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.63 36.01 0.35 -0.89 15 2 C -0.16 -2.49 5.90 -104.44 -0.62 -3.10 15 3 C -0.07 -1.12 9.86 -39.29 -0.39 -1.50 15 4 C -0.17 -3.11 9.18 -39.44 -0.36 -3.47 15 5 C 0.19 4.36 5.73 -82.59 -0.47 3.89 15 6 C 0.08 2.05 2.62 -92.93 -0.24 1.81 15 7 H 0.05 1.42 8.14 -51.93 -0.42 1.00 15 8 C -0.14 -3.13 8.39 37.16 0.31 -2.82 15 9 C -0.50 -13.78 8.55 -34.44 -0.29 -14.07 15 10 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 11 C 0.06 1.76 5.30 -17.82 -0.09 1.66 15 12 N -0.89 -24.81 11.32 55.43 0.63 -24.19 15 13 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 15 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 15 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 17 N -0.48 -10.75 10.25 -6.62 -0.07 -10.82 15 18 C 0.18 3.31 7.27 -17.45 -0.13 3.18 15 19 Cl -0.05 -0.88 27.46 -51.86 -1.42 -2.31 15 20 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 21 H 0.07 0.65 8.09 -51.93 -0.42 0.23 15 22 H 0.07 0.81 6.92 -51.93 -0.36 0.45 15 23 H 0.13 1.58 8.06 -52.48 -0.42 1.16 15 24 H 0.14 2.49 6.31 -52.49 -0.33 2.16 15 25 H 0.09 2.34 6.07 -51.93 -0.32 2.02 15 26 H 0.03 0.70 6.49 -51.93 -0.34 0.37 15 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 15 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 LS Contribution 254.73 15.07 3.84 3.84 Total: -1.00 -28.84 254.73 -6.98 -35.82 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -2.99 Total: -3.18 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -1.94 Total: -15.31 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.56 Total: -35.00 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.42 Total: -2.31 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.84 -6.98 -35.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218040.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.776 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds