Wall clock time and date at job start Mon Mar 30 2020 03:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38609 * 120.42071 * 2 1 4 4 C 1.38670 * 118.43685 * 180.02562 * 3 2 1 5 5 C 1.38189 * 119.19059 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.61083 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47167 * 154.96979 * 6 5 4 8 8 C 1.53002 * 109.46851 * 34.97546 * 6 5 4 9 9 C 1.50691 * 109.46954 * 274.97490 * 6 5 4 10 10 H 1.07996 * 120.00385 * 359.97438 * 9 6 5 11 11 C 1.37882 * 120.00079 * 179.97438 * 9 6 5 12 12 N 1.31519 * 119.99693 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 120.00153 * 180.02562 * 11 9 6 14 14 H 1.48492 * 109.47057 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46969 * 120.00245 * 13 11 9 16 16 H 1.48510 * 109.46767 * 239.99795 * 13 11 9 17 17 N 1.31878 * 120.78128 * 359.97438 * 5 4 3 18 18 C 1.31984 * 121.70616 * 0.02562 * 17 5 4 19 19 Cl 1.73599 * 119.63308 * 180.02562 * 18 17 5 20 20 H 1.08993 * 109.47356 * 269.97828 * 1 2 3 21 21 H 1.08994 * 109.46843 * 29.99100 * 1 2 3 22 22 H 1.09006 * 109.46443 * 149.98282 * 1 2 3 23 23 H 1.08006 * 120.78306 * 0.03783 * 3 2 1 24 24 H 1.07994 * 120.40486 * 180.02562 * 4 3 2 25 25 H 1.08999 * 109.46774 * 179.97438 * 8 6 5 26 26 H 1.08995 * 109.47149 * 299.99998 * 8 6 5 27 27 H 1.09002 * 109.47310 * 60.00114 * 8 6 5 28 28 H 0.96996 * 119.99718 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2089 1.1953 0.0000 4 6 3.5948 1.1473 -0.0005 5 6 4.2266 -0.0817 -0.0016 6 6 5.7323 -0.1450 -0.0016 7 1 6.0562 -1.0909 0.4324 8 6 6.2913 1.0139 0.8263 9 6 6.2393 -0.0417 -1.4169 10 1 5.5411 0.0592 -2.2347 11 6 7.5946 -0.0760 -1.6679 12 7 8.4449 -0.1993 -0.6721 13 14 8.2232 0.0528 -3.4223 14 1 7.0727 0.1822 -4.3520 15 1 9.0986 1.2457 -3.5481 16 1 8.9982 -1.1679 -3.7612 17 7 3.5275 -1.2000 -0.0016 18 6 2.2077 -1.1929 -0.0011 19 17 1.3413 -2.6973 -0.0004 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3633 0.8900 -0.5137 22 1 -0.3632 -0.8899 -0.5141 23 1 1.6887 2.1418 0.0006 24 1 4.1733 2.0592 -0.0001 25 1 7.3803 0.9679 0.8267 26 1 5.9674 1.9598 0.3924 27 1 5.9245 0.9392 1.8501 28 1 9.3983 -0.2230 -0.8486 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218040.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:47 Heat of formation + Delta-G solvation = -5.920697 kcal Electronic energy + Delta-G solvation = -13071.060684 eV Core-core repulsion = 10725.589191 eV Total energy + Delta-G solvation = -2345.471493 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.29695 -37.72551 -36.49236 -34.49416 -33.28050 -31.38995 -27.73779 -27.25680 -24.35349 -23.98810 -21.69970 -18.51909 -17.75944 -17.53339 -16.40414 -16.14388 -15.69792 -14.83352 -14.71436 -14.06432 -13.64497 -13.54052 -13.36204 -13.00426 -12.87427 -12.69473 -12.46211 -12.30653 -12.16283 -11.96566 -11.75988 -11.12016 -10.63175 -10.56679 -10.28093 -9.48997 -8.13577 -6.28493 0.08502 0.34322 0.86717 1.39890 1.42090 1.53422 2.40047 2.79279 3.13753 3.58081 3.87844 3.99971 4.12933 4.40519 4.60787 4.77170 4.83902 4.88519 5.02370 5.09833 5.21437 5.25550 5.30019 5.53595 5.74360 5.79472 6.02150 6.24356 6.76945 7.02521 7.39078 8.91506 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035798 B = 0.007588 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.977273 B = 3689.058310 C = 3906.019126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.140 4.140 3 C -0.057 4.057 4 C -0.169 4.169 5 C 0.157 3.843 6 C 0.082 3.918 7 H 0.003 0.997 8 C -0.122 4.122 9 C -0.520 4.520 10 H 0.044 0.956 11 C 0.019 3.981 12 N -0.913 5.913 13 Si 0.959 3.041 14 H -0.272 1.272 15 H -0.271 1.271 16 H -0.282 1.282 17 N -0.521 5.521 18 C 0.150 3.850 19 Cl -0.040 7.040 20 H 0.088 0.912 21 H 0.095 0.905 22 H 0.070 0.930 23 H 0.185 0.815 24 H 0.153 0.847 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.028 0.972 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.670 3.971 1.502 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.144 4.144 3 C -0.083 4.083 4 C -0.188 4.188 5 C 0.021 3.979 6 C 0.063 3.937 7 H 0.021 0.979 8 C -0.180 4.180 9 C -0.558 4.558 10 H 0.062 0.938 11 C -0.181 4.181 12 N -0.552 5.552 13 Si 0.784 3.216 14 H -0.197 1.197 15 H -0.196 1.196 16 H -0.208 1.208 17 N -0.232 5.232 18 C -0.014 4.014 19 Cl -0.012 7.012 20 H 0.107 0.893 21 H 0.114 0.886 22 H 0.089 0.911 23 H 0.202 0.798 24 H 0.170 0.830 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.124 3.016 1.543 14.525 hybrid contribution 0.466 0.083 -0.777 0.910 sum -13.658 3.099 0.766 14.026 Atomic orbital electron populations 1.20826 0.86755 1.04508 1.03979 1.20887 0.99621 0.90969 1.02889 1.21901 0.92802 0.98984 0.94595 1.22293 0.96016 0.99088 1.01430 1.21772 0.97358 0.87612 0.91178 1.17701 0.84371 0.95523 0.96154 0.97931 1.21687 1.02934 0.97468 0.95959 1.21125 0.91891 1.51069 0.91757 0.93803 1.25674 0.96851 0.94478 1.01049 1.70008 1.02573 1.50344 1.32264 0.85492 0.78212 0.77918 0.79946 1.19669 1.19617 1.20792 1.66739 1.07643 1.33938 1.14882 1.21888 0.89671 0.87911 1.01968 1.98333 1.73193 1.33002 1.96637 0.89315 0.88579 0.91062 0.79782 0.82981 0.91684 0.93113 0.95333 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 9.63 71.24 0.69 -1.27 15 2 C -0.14 -4.04 5.90 -19.75 -0.12 -4.16 15 3 C -0.06 -1.58 9.86 22.46 0.22 -1.36 15 4 C -0.17 -6.06 9.18 22.36 0.21 -5.85 15 5 C 0.16 7.18 5.73 42.54 0.24 7.42 15 6 C 0.08 4.30 2.62 -12.29 -0.03 4.27 15 7 H 0.00 0.15 8.14 -2.39 -0.02 0.14 15 8 C -0.12 -5.76 8.39 71.98 0.60 -5.16 15 9 C -0.52 -29.29 8.55 25.60 0.22 -29.07 15 10 H 0.04 2.50 7.74 -2.91 -0.02 2.48 15 11 C 0.02 1.04 5.30 84.66 0.45 1.49 15 12 N -0.91 -52.48 11.32 21.45 0.24 -52.23 15 13 Si 0.96 43.89 29.54 68.60 2.03 45.92 15 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 16 H -0.28 -12.79 7.11 99.48 0.71 -12.09 15 17 N -0.52 -23.87 10.25 -174.85 -1.79 -25.66 15 18 C 0.15 5.53 7.27 84.70 0.62 6.14 15 19 Cl -0.04 -1.26 27.46 -2.72 -0.07 -1.33 15 20 H 0.09 1.41 8.14 -2.39 -0.02 1.39 15 21 H 0.10 1.31 8.09 -2.39 -0.02 1.29 15 22 H 0.07 1.37 6.92 -2.38 -0.02 1.35 15 23 H 0.18 3.19 8.06 -2.91 -0.02 3.17 15 24 H 0.15 5.02 6.31 -2.91 -0.02 5.01 15 25 H 0.06 3.40 6.07 -2.39 -0.01 3.39 15 26 H 0.05 2.15 6.49 -2.39 -0.02 2.13 15 27 H 0.03 1.19 8.14 -2.39 -0.02 1.17 15 28 H 0.26 14.32 8.31 -92.71 -0.77 13.55 15 Total: -1.00 -65.20 254.73 4.66 -60.55 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: 1.16 Total: 0.30 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 3.10 Total: -27.54 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -1.55 Total: -77.89 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.07 Total: -1.33 kcal Total: -65.20 4.66 -60.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218040.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.624 kcal (2) G-P(sol) polarization free energy of solvation -65.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds