Wall clock time and date at job start Mon Mar 30 2020 03:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38611 * 120.42110 * 2 1 4 4 C 1.38668 * 118.43488 * 179.97438 * 3 2 1 5 5 C 1.38186 * 119.19414 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.61004 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47152 * 204.99738 * 6 5 4 8 8 C 1.53000 * 109.46912 * 324.99966 * 6 5 4 9 9 C 1.50699 * 109.47227 * 84.99855 * 6 5 4 10 10 H 1.07999 * 120.00019 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00129 * 180.02562 * 9 6 5 12 12 N 1.31519 * 119.99723 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99900 * 179.97438 * 11 9 6 14 14 H 1.48491 * 109.47312 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46948 * 119.99892 * 13 11 9 16 16 H 1.48500 * 109.46809 * 239.99811 * 13 11 9 17 17 N 1.31875 * 120.77780 * 0.25346 * 5 4 3 18 18 C 1.31972 * 121.71004 * 359.47832 * 17 5 4 19 19 Cl 1.73606 * 119.63674 * 180.26926 * 18 17 5 20 20 H 1.08996 * 109.47310 * 90.00314 * 1 2 3 21 21 H 1.09006 * 109.46742 * 210.00177 * 1 2 3 22 22 H 1.08999 * 109.47111 * 329.99467 * 1 2 3 23 23 H 1.08001 * 120.78287 * 359.95552 * 3 2 1 24 24 H 1.08003 * 120.40118 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.47194 * 299.99742 * 8 6 5 26 26 H 1.08992 * 109.47399 * 59.99914 * 8 6 5 27 27 H 1.09004 * 109.46724 * 180.02562 * 8 6 5 28 28 H 0.97003 * 119.99231 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2088 1.1953 0.0000 4 6 3.5947 1.1472 0.0005 5 6 4.2265 -0.0817 0.0016 6 6 5.7322 -0.1449 0.0016 7 1 6.0562 -1.0911 -0.4318 8 6 6.2912 1.0136 -0.8268 9 6 6.2393 -0.0410 1.4169 10 1 5.5412 0.0611 2.2346 11 6 7.5947 -0.0751 1.6678 12 7 8.4448 -0.1989 0.6720 13 14 8.2233 0.0545 3.4221 14 1 7.0728 0.1855 4.3518 15 1 8.9982 -1.1660 3.7617 16 1 9.0986 1.2475 3.5474 17 7 3.5274 -1.1999 -0.0029 18 6 2.2077 -1.1930 0.0016 19 17 1.3413 -2.6973 0.0024 20 1 -0.3634 -0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 1.6886 2.1417 -0.0007 24 1 4.1732 2.0592 0.0001 25 1 5.9244 0.9384 -1.8505 26 1 5.9673 1.9597 -0.3934 27 1 7.3803 0.9676 -0.8272 28 1 9.3984 -0.2225 0.8486 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218041.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:49 Heat of formation + Delta-G solvation = -5.916386 kcal Electronic energy + Delta-G solvation = -13070.979132 eV Core-core repulsion = 10725.507825 eV Total energy + Delta-G solvation = -2345.471306 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.29796 -37.72524 -36.49227 -34.49499 -33.28080 -31.39002 -27.73758 -27.25693 -24.35375 -23.98793 -21.70057 -18.51879 -17.75890 -17.53357 -16.40393 -16.14371 -15.69821 -14.83357 -14.71393 -14.06439 -13.64707 -13.53906 -13.36257 -13.00509 -12.87475 -12.69537 -12.46145 -12.30523 -12.16318 -11.96604 -11.75984 -11.11929 -10.63387 -10.56586 -10.28075 -9.48972 -8.13588 -6.28504 0.08498 0.34289 0.86680 1.39964 1.42103 1.53444 2.40045 2.79279 3.13781 3.58103 3.87806 3.99974 4.12925 4.40500 4.60767 4.77153 4.83878 4.88487 5.02345 5.09815 5.21441 5.25530 5.30019 5.53557 5.74336 5.79448 6.02123 6.24318 6.76927 7.02513 7.39093 8.91495 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035794 B = 0.007588 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.068748 B = 3689.186888 C = 3906.009703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.141 4.141 3 C -0.057 4.057 4 C -0.169 4.169 5 C 0.157 3.843 6 C 0.082 3.918 7 H 0.003 0.997 8 C -0.122 4.122 9 C -0.520 4.520 10 H 0.044 0.956 11 C 0.019 3.981 12 N -0.913 5.913 13 Si 0.959 3.041 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.271 1.271 17 N -0.521 5.521 18 C 0.150 3.850 19 Cl -0.040 7.040 20 H 0.088 0.912 21 H 0.071 0.929 22 H 0.095 0.905 23 H 0.185 0.815 24 H 0.153 0.847 25 H 0.028 0.972 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.670 3.966 -1.488 15.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.144 4.144 3 C -0.083 4.083 4 C -0.188 4.188 5 C 0.021 3.979 6 C 0.062 3.938 7 H 0.021 0.979 8 C -0.180 4.180 9 C -0.558 4.558 10 H 0.062 0.938 11 C -0.181 4.181 12 N -0.552 5.552 13 Si 0.784 3.216 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.196 1.196 17 N -0.232 5.232 18 C -0.014 4.014 19 Cl -0.012 7.012 20 H 0.107 0.893 21 H 0.089 0.911 22 H 0.114 0.886 23 H 0.202 0.798 24 H 0.170 0.830 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.124 3.011 -1.536 14.523 hybrid contribution 0.466 0.085 0.777 0.910 sum -13.658 3.096 -0.759 14.025 Atomic orbital electron populations 1.20826 0.86757 1.04511 1.03978 1.20888 0.99620 0.90969 1.02892 1.21900 0.92801 0.98984 0.94593 1.22293 0.96017 0.99089 1.01434 1.21769 0.97359 0.87609 0.91177 1.17703 0.84369 0.95524 0.96157 0.97927 1.21687 1.02935 0.97471 0.95954 1.21127 0.91894 1.51060 0.91765 0.93794 1.25674 0.96850 0.94479 1.01050 1.70012 1.02571 1.50345 1.32261 0.85491 0.78212 0.77916 0.79944 1.19665 1.20781 1.19631 1.66732 1.07647 1.33939 1.14890 1.21888 0.89670 0.87909 1.01962 1.98334 1.73193 1.33004 1.96637 0.89316 0.91058 0.88579 0.79784 0.82982 0.95341 0.93113 0.91683 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 9.64 71.24 0.69 -1.27 15 2 C -0.14 -4.04 5.90 -19.75 -0.12 -4.16 15 3 C -0.06 -1.58 9.86 22.46 0.22 -1.35 15 4 C -0.17 -6.06 9.18 22.36 0.21 -5.86 15 5 C 0.16 7.18 5.73 42.54 0.24 7.43 15 6 C 0.08 4.30 2.62 -12.29 -0.03 4.27 15 7 H 0.00 0.16 8.14 -2.39 -0.02 0.14 15 8 C -0.12 -5.77 8.39 71.98 0.60 -5.16 15 9 C -0.52 -29.29 8.55 25.60 0.22 -29.07 15 10 H 0.04 2.51 7.74 -2.91 -0.02 2.48 15 11 C 0.02 1.04 5.30 84.65 0.45 1.49 15 12 N -0.91 -52.48 11.32 21.45 0.24 -52.23 15 13 Si 0.96 43.88 29.54 68.60 2.03 45.91 15 14 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 15 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 17 N -0.52 -23.87 10.25 -174.85 -1.79 -25.66 15 18 C 0.15 5.53 7.27 84.70 0.62 6.15 15 19 Cl -0.04 -1.26 27.46 -2.72 -0.07 -1.33 15 20 H 0.09 1.41 8.14 -2.39 -0.02 1.39 15 21 H 0.07 1.37 6.92 -2.38 -0.02 1.35 15 22 H 0.10 1.31 8.10 -2.39 -0.02 1.29 15 23 H 0.18 3.19 8.06 -2.91 -0.02 3.17 15 24 H 0.15 5.02 6.31 -2.91 -0.02 5.01 15 25 H 0.03 1.19 8.14 -2.39 -0.02 1.17 15 26 H 0.05 2.15 6.49 -2.39 -0.02 2.13 15 27 H 0.06 3.40 6.07 -2.39 -0.01 3.39 15 28 H 0.26 14.32 8.31 -92.71 -0.77 13.55 15 Total: -1.00 -65.19 254.73 4.66 -60.53 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: 1.16 Total: 0.31 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 3.10 Total: -27.53 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -1.55 Total: -77.89 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.07 Total: -1.33 kcal Total: -65.19 4.66 -60.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218041.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.618 kcal (2) G-P(sol) polarization free energy of solvation -65.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds