Wall clock time and date at job start Mon Mar 30 2020 03:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31879 * 119.62408 * 2 1 4 4 C 1.31856 * 121.73547 * 180.27446 * 3 2 1 5 5 C 1.50700 * 119.60163 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47382 * 305.00188 * 5 4 3 7 7 C 1.50700 * 109.47072 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00354 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99803 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00031 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00194 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46926 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47406 * 119.99773 * 11 9 7 14 14 H 1.48502 * 109.47385 * 240.00257 * 11 9 7 15 15 C 1.38228 * 120.79287 * 359.97438 * 4 3 2 16 16 C 1.38601 * 119.17767 * 0.02562 * 15 4 3 17 17 C 1.38305 * 119.62935 * 180.27097 * 2 1 3 18 18 Cl 1.73595 * 120.42776 * 359.74530 * 17 2 1 19 19 H 1.09003 * 109.47436 * 269.73177 * 1 2 3 20 20 H 1.09009 * 109.47514 * 29.72993 * 1 2 3 21 21 H 1.09001 * 109.47156 * 149.72651 * 1 2 3 22 22 H 1.09005 * 109.47096 * 65.00141 * 5 4 3 23 23 H 1.08996 * 109.47072 * 184.99832 * 5 4 3 24 24 H 1.08997 * 109.46697 * 300.00065 * 6 5 4 25 25 H 1.09005 * 109.46731 * 59.99773 * 6 5 4 26 26 H 0.96997 * 120.00022 * 180.02562 * 10 9 7 27 27 H 1.08000 * 120.40875 * 180.02562 * 15 4 3 28 28 H 1.08000 * 120.79484 * 179.97438 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1464 0.0000 4 6 3.4765 1.1950 -0.0054 5 6 4.1721 2.5318 -0.0057 6 6 3.6687 3.3685 -1.1836 7 6 4.3639 4.7056 -1.1835 8 1 5.0923 4.9355 -0.4199 9 6 4.0708 5.6350 -2.1588 10 7 3.1842 5.3549 -3.0889 11 14 4.9330 7.2921 -2.1592 12 1 5.8787 7.3582 -1.0162 13 1 5.6815 7.4604 -3.4306 14 1 3.9247 8.3748 -2.0313 15 6 4.2274 0.0345 -0.0107 16 6 3.5785 -1.1902 -0.0109 17 6 2.1907 -1.2022 -0.0057 18 17 1.3243 -2.7064 -0.0061 19 1 -0.3634 -0.0048 1.0277 20 1 -0.3634 0.8924 -0.5097 21 1 -0.3633 -0.8875 -0.5181 22 1 3.9584 3.0528 0.9276 23 1 5.2476 2.3818 -0.1000 24 1 3.8824 2.8475 -2.1168 25 1 2.5931 3.5185 -1.0892 26 1 2.9782 6.0086 -3.7753 27 1 5.3064 0.0815 -0.0147 28 1 4.1393 -2.1132 -0.0154 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261222164.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:22 Heat of formation + Delta-G solvation = -13.701991 kcal Electronic energy + Delta-G solvation = -12686.181668 eV Core-core repulsion = 10340.372752 eV Total energy + Delta-G solvation = -2345.808915 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.38855 -37.71814 -36.04953 -34.41093 -33.73099 -31.64730 -28.87764 -27.06056 -24.34012 -23.17458 -22.04896 -18.54914 -17.77146 -17.67046 -16.52745 -16.11434 -15.83948 -14.93222 -14.65788 -14.34702 -13.95138 -13.65241 -13.40621 -13.21770 -13.16362 -12.85041 -12.72348 -12.40654 -12.02483 -11.82472 -11.55337 -11.21578 -10.74171 -10.57331 -10.35204 -9.60729 -8.18273 -6.30420 -0.06913 0.21139 1.01557 1.41407 1.42169 1.55570 2.41874 2.63513 3.14955 3.25787 3.64948 3.74985 3.99995 4.30187 4.51832 4.62004 4.64980 4.68122 4.77411 4.90144 5.08266 5.14076 5.16173 5.49899 5.59730 5.72200 5.86619 6.22596 6.87246 7.02119 7.38946 8.93997 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.057948 B = 0.005447 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.078779 B = 5139.633836 C = 5415.056325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.125 3.875 3 N -0.502 5.502 4 C 0.132 3.868 5 C -0.058 4.058 6 C 0.041 3.959 7 C -0.542 4.542 8 H 0.068 0.932 9 C -0.004 4.004 10 N -0.935 5.935 11 Si 0.969 3.031 12 H -0.257 1.257 13 H -0.278 1.278 14 H -0.281 1.281 15 C -0.168 4.168 16 C -0.056 4.056 17 C -0.109 4.109 18 Cl -0.044 7.044 19 H 0.096 0.904 20 H 0.069 0.931 21 H 0.094 0.906 22 H 0.071 0.929 23 H 0.089 0.911 24 H -0.018 1.018 25 H -0.007 1.007 26 H 0.263 0.737 27 H 0.170 0.830 28 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 -15.263 7.276 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.014 4.014 3 N -0.213 5.213 4 C -0.005 4.005 5 C -0.096 4.096 6 C 0.003 3.997 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.201 4.201 10 N -0.576 5.576 11 Si 0.793 3.207 12 H -0.181 1.181 13 H -0.204 1.204 14 H -0.206 1.206 15 C -0.187 4.187 16 C -0.081 4.081 17 C -0.138 4.138 18 Cl -0.015 7.015 19 H 0.114 0.886 20 H 0.088 0.912 21 H 0.113 0.887 22 H 0.090 0.910 23 H 0.108 0.892 24 H 0.001 0.999 25 H 0.012 0.988 26 H 0.071 0.929 27 H 0.187 0.813 28 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.311 -14.558 7.142 16.269 hybrid contribution 0.479 0.149 -0.420 0.654 sum -0.833 -14.409 6.723 15.922 Atomic orbital electron populations 1.20854 0.86991 1.04104 1.04364 1.21682 0.98685 0.86665 0.94349 1.67508 1.10986 1.28922 1.13915 1.21824 0.89302 0.97137 0.92253 1.20599 0.99020 0.90006 0.99954 1.18808 0.95319 0.93581 0.91954 1.21751 1.23542 1.00610 1.12062 0.91425 1.26043 0.95934 1.03068 0.95056 1.70143 1.34680 1.36798 1.15936 0.85344 0.78415 0.78497 0.78442 1.18107 1.20389 1.20638 1.22277 1.03005 0.91112 1.02348 1.21848 0.91906 0.99985 0.94409 1.21905 0.94028 0.88174 1.09682 1.98338 1.76412 1.29816 1.96926 0.88582 0.91230 0.88700 0.91033 0.89218 0.99942 0.98835 0.92877 0.81267 0.80482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.77 9.78 71.23 0.70 -2.08 15 2 C 0.13 4.06 6.78 42.57 0.29 4.35 15 3 N -0.50 -20.12 9.79 -171.99 -1.68 -21.81 15 4 C 0.13 4.97 6.18 42.55 0.26 5.23 15 5 C -0.06 -2.44 5.55 29.85 0.17 -2.27 15 6 C 0.04 2.24 4.83 29.85 0.14 2.39 15 7 C -0.54 -31.21 9.11 25.60 0.23 -30.98 15 8 H 0.07 3.65 7.74 -2.91 -0.02 3.63 15 9 C 0.00 -0.21 5.46 84.65 0.46 0.25 15 10 N -0.94 -58.56 13.29 21.45 0.28 -58.28 15 11 Si 0.97 44.68 29.54 68.60 2.03 46.71 15 12 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 13 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 15 C -0.17 -4.77 9.71 22.35 0.22 -4.56 15 16 C -0.06 -1.35 9.98 22.49 0.22 -1.13 15 17 C -0.11 -2.94 6.34 22.42 0.14 -2.80 15 18 Cl -0.04 -0.93 27.33 -2.72 -0.07 -1.00 15 19 H 0.10 2.14 8.14 -2.39 -0.02 2.12 15 20 H 0.07 2.00 8.14 -2.38 -0.02 1.98 15 21 H 0.09 2.07 6.90 -2.39 -0.02 2.05 15 22 H 0.07 2.97 8.14 -2.38 -0.02 2.95 15 23 H 0.09 3.31 7.87 -2.39 -0.02 3.29 15 24 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 15 25 H -0.01 -0.42 7.95 -2.38 -0.02 -0.44 15 26 H 0.26 15.36 8.31 -92.71 -0.77 14.59 15 27 H 0.17 3.73 7.95 -2.91 -0.02 3.71 15 28 H 0.18 2.91 8.06 -2.91 -0.02 2.88 15 Total: -1.00 -69.01 262.32 4.54 -64.47 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: 1.15 Total: 1.50 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 2.84 Total: -31.59 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -1.40 Total: -80.09 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.07 Total: -1.00 kcal Total: -69.01 4.54 -64.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222164.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.767 kcal (2) G-P(sol) polarization free energy of solvation -69.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds