Wall clock time and date at job start Mon Mar 30 2020 03:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38230 * 119.60355 * 2 1 4 4 C 1.38609 * 119.17148 * 180.02562 * 3 2 1 5 5 C 1.38776 * 118.41205 * 359.97438 * 4 3 2 6 6 Cl 1.73602 * 120.43112 * 180.02562 * 5 4 3 7 7 C 1.38301 * 119.14061 * 0.02562 * 5 4 3 8 8 C 1.50699 * 119.63317 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46916 * 0.02562 * 8 7 5 10 10 C 1.52997 * 109.47592 * 240.00143 * 8 7 5 11 11 C 1.50706 * 109.46824 * 119.99661 * 8 7 5 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99398 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99350 * 180.02562 * 13 11 8 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 8 16 16 H 1.48493 * 109.47326 * 270.00340 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00090 * 15 13 11 18 18 H 1.48498 * 109.47210 * 149.99801 * 15 13 11 19 19 N 1.31859 * 119.59873 * 180.27234 * 2 1 3 20 20 H 1.09000 * 109.47347 * 90.00233 * 1 2 3 21 21 H 1.08996 * 109.46943 * 210.00282 * 1 2 3 22 22 H 1.08997 * 109.46685 * 330.00260 * 1 2 3 23 23 H 1.07993 * 120.41665 * 0.03925 * 3 2 1 24 24 H 1.08006 * 120.79235 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.46922 * 179.97438 * 10 8 7 26 26 H 1.09000 * 109.47140 * 300.00047 * 10 8 7 27 27 H 1.09002 * 109.47045 * 59.99955 * 10 8 7 28 28 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1899 1.2019 0.0000 4 6 3.5759 1.1914 -0.0005 5 6 4.2270 -0.0341 -0.0005 6 17 5.9614 -0.1084 -0.0005 7 6 3.4762 -1.1956 -0.0005 8 6 4.1718 -2.5325 -0.0011 9 1 5.2511 -2.3804 -0.0010 10 6 3.7670 -3.3176 -1.2503 11 6 3.7739 -3.3062 1.2295 12 1 3.0858 -2.8734 1.9405 13 6 4.2883 -4.5667 1.4474 14 7 3.9407 -5.2421 2.5210 15 14 5.4790 -5.3152 0.2179 16 1 4.7193 -6.0733 -0.8083 17 1 6.2559 -4.2339 -0.4398 18 1 6.4082 -6.2330 0.9245 19 7 2.1583 -1.1465 -0.0054 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3632 0.8900 0.5138 23 1 1.6503 2.1373 0.0006 24 1 4.1358 2.1150 -0.0010 25 1 4.2705 -4.2843 -1.2508 26 1 2.6876 -3.4696 -1.2500 27 1 4.0548 -2.7579 -2.1403 28 1 4.3023 -6.1291 2.6742 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261227426.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:42 Heat of formation + Delta-G solvation = 21.841020 kcal Electronic energy + Delta-G solvation = -13303.181057 eV Core-core repulsion = 10958.913402 eV Total energy + Delta-G solvation = -2344.267655 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.95037 -36.21600 -34.81024 -32.32420 -31.98380 -30.28382 -27.11144 -25.05022 -23.63655 -21.81027 -20.02423 -16.86389 -16.39026 -15.84324 -15.19587 -14.43114 -14.04556 -13.36739 -13.11408 -12.71526 -12.67446 -12.19599 -12.09005 -11.97796 -11.36423 -11.16316 -11.06593 -10.69648 -10.45916 -9.91883 -9.52973 -9.33774 -9.04235 -8.80579 -8.51447 -8.11525 -6.02853 -4.01267 1.38706 1.61567 2.52835 3.30920 3.40923 3.43049 4.12025 4.44149 4.71279 4.94511 5.08573 5.27307 5.32806 5.59493 5.72532 5.78743 5.97980 6.14748 6.25450 6.27352 6.40676 6.58476 6.71384 6.93753 7.04382 7.43769 7.70016 8.47959 8.60641 9.01379 9.56789 11.10302 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.011145 C = 0.008929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.413830 B = 2511.841753 C = 3135.032454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.127 3.873 3 C -0.191 4.191 4 C -0.067 4.067 5 C -0.105 4.105 6 Cl -0.062 7.062 7 C 0.205 3.795 8 C 0.041 3.959 9 H 0.055 0.945 10 C -0.139 4.139 11 C -0.495 4.495 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.899 5.899 15 Si 0.883 3.117 16 H -0.278 1.278 17 H -0.264 1.264 18 H -0.297 1.297 19 N -0.452 5.452 20 H 0.075 0.925 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.133 0.867 24 H 0.136 0.864 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.026 0.974 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.721 12.171 -6.787 14.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.011 4.011 3 C -0.211 4.211 4 C -0.094 4.094 5 C -0.134 4.134 6 Cl -0.034 7.034 7 C 0.067 3.933 8 C 0.022 3.978 9 H 0.073 0.927 10 C -0.197 4.197 11 C -0.533 4.533 12 H 0.094 0.906 13 C -0.129 4.129 14 N -0.537 5.537 15 Si 0.713 3.287 16 H -0.205 1.205 17 H -0.189 1.189 18 H -0.224 1.224 19 N -0.162 5.162 20 H 0.093 0.907 21 H 0.099 0.901 22 H 0.089 0.911 23 H 0.151 0.849 24 H 0.154 0.846 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.023 11.222 -6.686 13.219 hybrid contribution 1.269 0.356 -0.511 1.414 sum -0.754 11.579 -7.196 13.654 Atomic orbital electron populations 1.20680 0.89039 1.03403 1.02728 1.21479 0.97239 0.88532 0.93884 1.21749 0.93751 0.99261 1.06329 1.21361 0.94498 0.96607 0.96897 1.21937 0.85775 0.95810 1.09871 1.98328 1.09493 1.98504 1.97028 1.21673 0.88466 0.95342 0.87845 1.18535 0.95729 0.87350 0.96177 0.92682 1.22072 1.02229 0.98900 0.96456 1.20713 1.27873 1.00272 1.04438 0.90592 1.24919 0.96020 0.96731 0.95267 1.69880 1.44467 1.12622 1.26764 0.86912 0.81317 0.79390 0.81065 1.20470 1.18920 1.22421 1.67655 1.08624 1.27806 1.12069 0.90674 0.90140 0.91085 0.84901 0.84628 0.93790 0.91837 0.95475 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 10.17 36.01 0.37 -0.92 15 2 C 0.13 2.14 6.78 -82.58 -0.56 1.58 15 3 C -0.19 -2.75 9.74 -39.45 -0.38 -3.13 15 4 C -0.07 -1.03 9.98 -39.25 -0.39 -1.43 15 5 C -0.10 -1.99 6.34 -39.36 -0.25 -2.24 15 6 Cl -0.06 -1.11 27.03 -51.86 -1.40 -2.51 15 7 C 0.21 4.51 5.41 -82.55 -0.45 4.06 15 8 C 0.04 1.02 2.04 -92.92 -0.19 0.83 15 9 H 0.06 1.35 5.21 -51.93 -0.27 1.08 15 10 C -0.14 -3.18 8.57 37.16 0.32 -2.86 15 11 C -0.49 -14.23 9.01 -34.44 -0.31 -14.54 15 12 H 0.08 2.42 7.98 -52.49 -0.42 2.00 15 13 C 0.07 2.11 5.45 -17.82 -0.10 2.01 15 14 N -0.90 -27.85 13.96 55.43 0.77 -27.07 15 15 Si 0.88 22.18 24.37 -169.99 -4.14 18.04 15 16 H -0.28 -6.78 6.87 56.52 0.39 -6.40 15 17 H -0.26 -6.33 6.53 56.52 0.37 -5.96 15 18 H -0.30 -7.43 7.11 56.52 0.40 -7.03 15 19 N -0.45 -9.61 9.79 -5.71 -0.06 -9.66 15 20 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 22 H 0.07 0.70 8.08 -51.93 -0.42 0.28 15 23 H 0.13 1.41 8.06 -52.49 -0.42 0.98 15 24 H 0.14 1.64 8.06 -52.48 -0.42 1.22 15 25 H 0.04 1.03 3.28 -51.93 -0.17 0.86 15 26 H 0.06 1.46 8.03 -51.93 -0.42 1.04 15 27 H 0.03 0.54 8.14 -51.93 -0.42 0.11 15 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 15 LS Contribution 250.58 15.07 3.78 3.78 Total: -1.00 -31.48 250.58 -5.99 -37.47 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: -2.99 Total: -3.40 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -1.94 Total: -16.64 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.72 Total: -36.74 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.04 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.40 Total: -2.51 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.48 -5.99 -37.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227426.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.311 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds