Wall clock time and date at job start Mon Mar 30 2020 03:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38230 * 119.60355 * 2 1 4 4 C 1.38609 * 119.17148 * 180.02562 * 3 2 1 5 5 C 1.38776 * 118.41205 * 359.97438 * 4 3 2 6 6 Cl 1.73602 * 120.43112 * 180.02562 * 5 4 3 7 7 C 1.38301 * 119.14061 * 0.02562 * 5 4 3 8 8 C 1.50699 * 119.63317 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46916 * 0.02562 * 8 7 5 10 10 C 1.52997 * 109.47592 * 240.00143 * 8 7 5 11 11 C 1.50706 * 109.46824 * 119.99661 * 8 7 5 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99398 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99350 * 180.02562 * 13 11 8 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 8 16 16 H 1.48493 * 109.47326 * 270.00340 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00090 * 15 13 11 18 18 H 1.48498 * 109.47210 * 149.99801 * 15 13 11 19 19 N 1.31859 * 119.59873 * 180.27234 * 2 1 3 20 20 H 1.09000 * 109.47347 * 90.00233 * 1 2 3 21 21 H 1.08996 * 109.46943 * 210.00282 * 1 2 3 22 22 H 1.08997 * 109.46685 * 330.00260 * 1 2 3 23 23 H 1.07993 * 120.41665 * 0.03925 * 3 2 1 24 24 H 1.08006 * 120.79235 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.46922 * 179.97438 * 10 8 7 26 26 H 1.09000 * 109.47140 * 300.00047 * 10 8 7 27 27 H 1.09002 * 109.47045 * 59.99955 * 10 8 7 28 28 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1899 1.2019 0.0000 4 6 3.5759 1.1914 -0.0005 5 6 4.2270 -0.0341 -0.0005 6 17 5.9614 -0.1084 -0.0005 7 6 3.4762 -1.1956 -0.0005 8 6 4.1718 -2.5325 -0.0011 9 1 5.2511 -2.3804 -0.0010 10 6 3.7670 -3.3176 -1.2503 11 6 3.7739 -3.3062 1.2295 12 1 3.0858 -2.8734 1.9405 13 6 4.2883 -4.5667 1.4474 14 7 3.9407 -5.2421 2.5210 15 14 5.4790 -5.3152 0.2179 16 1 4.7193 -6.0733 -0.8083 17 1 6.2559 -4.2339 -0.4398 18 1 6.4082 -6.2330 0.9245 19 7 2.1583 -1.1465 -0.0054 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3632 0.8900 0.5138 23 1 1.6503 2.1373 0.0006 24 1 4.1358 2.1150 -0.0010 25 1 4.2705 -4.2843 -1.2508 26 1 2.6876 -3.4696 -1.2500 27 1 4.0548 -2.7579 -2.1403 28 1 4.3023 -6.1291 2.6742 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261227426.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:42 Heat of formation + Delta-G solvation = 0.852569 kcal Electronic energy + Delta-G solvation = -13304.091184 eV Core-core repulsion = 10958.913402 eV Total energy + Delta-G solvation = -2345.177782 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.31815 -37.59252 -36.59846 -34.01071 -33.51332 -31.91217 -28.35434 -27.12427 -25.18601 -23.11073 -21.74941 -18.85999 -17.73412 -17.42119 -16.94179 -15.91322 -15.49190 -14.96672 -14.84126 -14.23100 -14.09722 -13.83913 -13.44473 -13.12374 -13.01017 -12.92363 -12.50542 -12.37854 -12.27644 -11.76995 -11.40241 -11.13361 -10.75009 -10.61601 -10.20503 -9.50618 -8.28360 -6.31095 0.05346 0.32598 1.15383 1.30720 1.36018 1.46718 2.32740 2.75679 3.06552 3.41790 3.77062 3.82820 4.09169 4.38084 4.46876 4.58329 4.72303 4.79513 4.83488 4.87764 4.98307 5.07164 5.15988 5.21239 5.54522 5.62953 5.75904 6.27663 6.70494 7.18707 7.30551 8.88948 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.011145 C = 0.008929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.413830 B = 2511.841753 C = 3135.032454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.109 3.891 3 C -0.168 4.168 4 C -0.060 4.060 5 C -0.119 4.119 6 Cl -0.061 7.061 7 C 0.165 3.835 8 C 0.041 3.959 9 H 0.055 0.945 10 C -0.134 4.134 11 C -0.494 4.494 12 H 0.026 0.974 13 C 0.014 3.986 14 N -0.949 5.949 15 Si 0.945 3.055 16 H -0.265 1.265 17 H -0.244 1.244 18 H -0.295 1.295 19 N -0.495 5.495 20 H 0.094 0.906 21 H 0.058 0.942 22 H 0.106 0.894 23 H 0.184 0.816 24 H 0.175 0.825 25 H 0.038 0.962 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 14.576 -8.546 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.029 4.029 3 C -0.188 4.188 4 C -0.086 4.086 5 C -0.148 4.148 6 Cl -0.032 7.032 7 C 0.028 3.972 8 C 0.022 3.978 9 H 0.073 0.927 10 C -0.191 4.191 11 C -0.533 4.533 12 H 0.044 0.956 13 C -0.183 4.183 14 N -0.590 5.590 15 Si 0.771 3.229 16 H -0.191 1.191 17 H -0.167 1.167 18 H -0.223 1.223 19 N -0.206 5.206 20 H 0.112 0.888 21 H 0.077 0.923 22 H 0.125 0.875 23 H 0.202 0.798 24 H 0.192 0.808 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.914 13.647 -8.461 16.171 hybrid contribution 1.095 -0.240 0.099 1.125 sum -0.819 13.407 -8.361 15.822 Atomic orbital electron populations 1.20797 0.86442 1.04118 1.04154 1.22210 0.99072 0.88381 0.93235 1.22289 0.93515 1.00236 1.02739 1.21845 0.95200 0.96562 0.95026 1.22037 0.85909 0.96316 1.10512 1.98318 1.09287 1.98522 1.97086 1.21289 0.89319 0.95077 0.91558 1.18366 0.95979 0.88933 0.94533 0.92704 1.21960 1.01403 0.98737 0.97012 1.20884 1.26339 1.00694 1.05334 0.95603 1.25798 0.98054 0.97243 0.97215 1.70037 1.46516 1.13294 1.29156 0.85903 0.79156 0.79020 0.78822 1.19080 1.16732 1.22275 1.67519 1.08766 1.30759 1.13535 0.88771 0.92267 0.87501 0.79844 0.80777 0.94346 0.92997 0.92594 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.25 10.17 71.24 0.72 -1.53 15 2 C 0.11 3.46 6.78 42.55 0.29 3.75 15 3 C -0.17 -4.13 9.74 22.36 0.22 -3.91 15 4 C -0.06 -1.63 9.98 22.49 0.22 -1.41 15 5 C -0.12 -4.32 6.34 22.41 0.14 -4.17 15 6 Cl -0.06 -2.08 27.03 -2.72 -0.07 -2.15 15 7 C 0.17 7.26 5.41 42.57 0.23 7.49 15 8 C 0.04 2.04 2.04 -12.29 -0.03 2.01 15 9 H 0.06 2.67 5.21 -2.39 -0.01 2.66 15 10 C -0.13 -6.04 8.57 71.98 0.62 -5.42 15 11 C -0.49 -29.59 9.01 25.60 0.23 -29.36 15 12 H 0.03 1.75 7.98 -2.91 -0.02 1.72 15 13 C 0.01 0.81 5.45 84.66 0.46 1.27 15 14 N -0.95 -61.18 13.96 21.45 0.30 -60.88 15 15 Si 0.94 46.07 24.37 68.60 1.67 47.74 15 16 H -0.26 -12.28 6.87 99.48 0.68 -11.59 15 17 H -0.24 -10.97 6.53 99.48 0.65 -10.32 15 18 H -0.30 -14.21 7.11 99.48 0.71 -13.50 15 19 N -0.50 -21.11 9.79 -171.98 -1.68 -22.80 15 20 H 0.09 1.80 8.14 -2.39 -0.02 1.78 15 21 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.11 1.66 8.08 -2.39 -0.02 1.64 15 23 H 0.18 2.64 8.06 -2.91 -0.02 2.61 15 24 H 0.17 3.32 8.06 -2.91 -0.02 3.29 15 25 H 0.04 1.74 3.28 -2.39 -0.01 1.73 15 26 H 0.05 2.41 8.03 -2.39 -0.02 2.39 15 27 H 0.06 2.15 8.14 -2.39 -0.02 2.14 15 28 H 0.27 15.99 8.31 -92.70 -0.77 15.22 15 Total: -1.00 -72.40 250.58 4.41 -68.00 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: 1.08 Total: 1.37 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 3.11 Total: -31.28 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -1.39 Total: -83.67 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.67 Total: 47.74 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -0.07 Total: -2.15 kcal Total: -72.40 4.41 -68.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227426.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.848 kcal (2) G-P(sol) polarization free energy of solvation -72.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds