Wall clock time and date at job start Mon Mar 30 2020 03:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38236 * 119.60151 * 2 1 4 4 C 1.38604 * 119.17293 * 180.25735 * 3 2 1 5 5 C 1.38787 * 118.41337 * 0.02562 * 4 3 2 6 6 Cl 1.73596 * 120.43532 * 180.02562 * 5 4 3 7 7 C 1.38308 * 119.13514 * 0.02562 * 5 4 3 8 8 C 1.50693 * 119.62760 * 179.97438 * 7 5 4 9 9 H 1.08993 * 109.47187 * 359.97438 * 8 7 5 10 10 C 1.53000 * 109.46975 * 119.97776 * 8 7 5 11 11 C 1.50704 * 109.47334 * 239.97405 * 8 7 5 12 12 H 1.08001 * 119.99777 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99743 * 179.97438 * 11 8 7 14 14 N 1.31507 * 120.00368 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99581 * 180.02562 * 13 11 8 16 16 H 1.48507 * 109.47025 * 90.00426 * 15 13 11 17 17 H 1.48496 * 109.47451 * 210.00453 * 15 13 11 18 18 H 1.48503 * 109.47330 * 330.00658 * 15 13 11 19 19 N 1.31854 * 119.60436 * 180.28128 * 2 1 3 20 20 H 1.09000 * 109.46579 * 269.72505 * 1 2 3 21 21 H 1.08992 * 109.47130 * 29.72077 * 1 2 3 22 22 H 1.09002 * 109.46856 * 149.72388 * 1 2 3 23 23 H 1.07994 * 120.41491 * 0.25721 * 3 2 1 24 24 H 1.08004 * 120.79714 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47250 * 60.00159 * 10 8 7 26 26 H 1.09001 * 109.47196 * 180.02562 * 10 8 7 27 27 H 1.09004 * 109.47357 * 300.00080 * 10 8 7 28 28 H 0.96997 * 120.00462 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1899 1.2019 0.0000 4 6 3.5759 1.1916 -0.0054 5 6 4.2271 -0.0340 -0.0112 6 17 5.9615 -0.1082 -0.0175 7 6 3.4763 -1.1955 -0.0120 8 6 4.1719 -2.5323 -0.0188 9 1 5.2512 -2.3802 -0.0230 10 6 3.7728 -3.3213 1.2298 11 6 3.7684 -3.3023 -1.2498 12 1 3.0776 -2.8670 -1.9567 13 6 4.2819 -4.5621 -1.4741 14 7 5.1234 -5.0919 -0.6135 15 14 3.7822 -5.5162 -3.0003 16 1 4.7225 -5.2068 -4.1074 17 1 3.8221 -6.9718 -2.7093 18 1 2.4049 -5.1284 -3.3977 19 7 2.1584 -1.1464 -0.0056 20 1 -0.3632 -0.0049 1.0277 21 1 -0.3633 0.8924 -0.5095 22 1 -0.3633 -0.8875 -0.5181 23 1 1.6502 2.1373 0.0042 24 1 4.1358 2.1152 -0.0052 25 1 2.6934 -3.4734 1.2339 26 1 4.2763 -4.2880 1.2251 27 1 4.0646 -2.7644 2.1203 28 1 5.4850 -5.9780 -0.7715 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261227427.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:45 Heat of formation + Delta-G solvation = -4.450918 kcal Electronic energy + Delta-G solvation = -13254.321569 eV Core-core repulsion = 10908.913810 eV Total energy + Delta-G solvation = -2345.407759 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.24330 -37.52141 -36.45365 -33.81065 -33.44914 -31.32001 -28.22798 -27.21867 -25.00294 -23.02224 -21.75797 -18.50687 -17.68673 -17.24646 -16.78251 -15.77351 -15.54347 -14.72108 -14.61647 -14.16484 -13.79624 -13.44344 -13.22779 -13.04008 -12.86473 -12.84156 -12.43298 -12.36594 -12.24285 -11.96203 -11.60696 -11.00066 -10.56922 -10.42813 -10.14538 -9.45124 -8.08415 -6.19756 0.10525 0.36504 1.22537 1.40516 1.41284 1.52064 2.43440 2.82673 3.19409 3.50128 3.85295 3.89121 4.14314 4.44089 4.73063 4.77932 4.84343 4.87705 4.98745 5.04358 5.16605 5.23662 5.29959 5.57195 5.73690 5.90255 6.01595 6.31745 6.83322 7.24163 7.45244 8.96915 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.024985 B = 0.010570 C = 0.008541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.388946 B = 2648.290129 C = 3277.342051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.108 3.892 3 C -0.173 4.173 4 C -0.062 4.062 5 C -0.123 4.123 6 Cl -0.064 7.064 7 C 0.161 3.839 8 C 0.073 3.927 9 H 0.040 0.960 10 C -0.114 4.114 11 C -0.508 4.508 12 H 0.040 0.960 13 C 0.016 3.984 14 N -0.915 5.915 15 Si 0.954 3.046 16 H -0.275 1.275 17 H -0.279 1.279 18 H -0.274 1.274 19 N -0.495 5.495 20 H 0.091 0.909 21 H 0.107 0.893 22 H 0.062 0.938 23 H 0.183 0.817 24 H 0.172 0.828 25 H 0.027 0.973 26 H 0.064 0.936 27 H 0.018 0.982 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.396 13.254 1.583 14.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.030 4.030 3 C -0.192 4.192 4 C -0.088 4.088 5 C -0.152 4.152 6 Cl -0.035 7.035 7 C 0.023 3.977 8 C 0.054 3.946 9 H 0.058 0.942 10 C -0.172 4.172 11 C -0.546 4.546 12 H 0.059 0.941 13 C -0.183 4.183 14 N -0.555 5.555 15 Si 0.779 3.221 16 H -0.200 1.200 17 H -0.204 1.204 18 H -0.199 1.199 19 N -0.206 5.206 20 H 0.109 0.891 21 H 0.125 0.875 22 H 0.081 0.919 23 H 0.200 0.800 24 H 0.189 0.811 25 H 0.047 0.953 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.612 12.307 1.614 13.622 hybrid contribution 0.750 -0.188 -0.693 1.038 sum -4.862 12.119 0.921 13.090 Atomic orbital electron populations 1.20787 0.86329 1.04221 1.04033 1.22246 0.99113 0.88426 0.93234 1.22258 0.93402 1.00273 1.03273 1.21830 0.95290 0.96447 0.95245 1.22085 0.85894 0.96434 1.10777 1.98318 1.09533 1.98553 1.97092 1.21773 0.89360 0.95966 0.90562 1.17900 0.94890 0.86866 0.94958 0.94188 1.21506 0.99156 1.01371 0.95135 1.21090 1.26308 1.01195 1.06056 0.94130 1.25628 0.95070 0.98197 0.99367 1.69985 1.31822 1.16938 1.36742 0.85625 0.78547 0.77928 0.79971 1.20028 1.20389 1.19924 1.67549 1.08738 1.30572 1.13736 0.89091 0.87476 0.91945 0.79965 0.81079 0.95339 0.91689 0.96334 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.21 10.17 71.24 0.72 -1.49 15 2 C 0.11 3.50 6.78 42.56 0.29 3.78 15 3 C -0.17 -4.43 9.74 22.36 0.22 -4.21 15 4 C -0.06 -1.79 9.98 22.49 0.22 -1.57 15 5 C -0.12 -4.77 6.34 22.42 0.14 -4.63 15 6 Cl -0.06 -2.39 27.03 -2.72 -0.07 -2.46 15 7 C 0.16 7.42 5.41 42.57 0.23 7.65 15 8 C 0.07 3.89 2.45 -12.29 -0.03 3.86 15 9 H 0.04 2.24 6.16 -2.39 -0.01 2.23 15 10 C -0.11 -5.95 8.87 71.98 0.64 -5.31 15 11 C -0.51 -29.49 8.43 25.60 0.22 -29.27 15 12 H 0.04 2.41 7.74 -2.91 -0.02 2.39 15 13 C 0.02 0.90 5.30 84.66 0.45 1.35 15 14 N -0.92 -53.80 11.32 21.45 0.24 -53.55 15 15 Si 0.95 45.28 29.54 68.60 2.03 47.31 15 16 H -0.27 -12.66 7.11 99.48 0.71 -11.95 15 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 18 H -0.27 -12.91 7.11 99.48 0.71 -12.20 15 19 N -0.50 -21.56 9.80 -171.98 -1.68 -23.25 15 20 H 0.09 1.79 8.14 -2.39 -0.02 1.77 15 21 H 0.11 1.64 8.07 -2.39 -0.02 1.62 15 22 H 0.06 1.64 8.14 -2.39 -0.02 1.62 15 23 H 0.18 2.80 8.06 -2.91 -0.02 2.78 15 24 H 0.17 3.59 8.06 -2.91 -0.02 3.57 15 25 H 0.03 1.47 8.03 -2.39 -0.02 1.45 15 26 H 0.06 3.67 6.07 -2.39 -0.01 3.65 15 27 H 0.02 0.86 8.14 -2.38 -0.02 0.84 15 28 H 0.26 14.61 8.31 -92.71 -0.77 13.84 15 Total: -1.00 -67.04 257.40 4.77 -62.27 By element: Atomic # 1 Polarization: -1.64 SS G_CDS: 1.15 Total: -0.49 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 3.10 Total: -29.84 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -1.44 Total: -76.80 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -0.07 Total: -2.46 kcal Total: -67.04 4.77 -62.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227427.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.822 kcal (2) G-P(sol) polarization free energy of solvation -67.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds