Wall clock time and date at job start Mon Mar 30 2020 03:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38224 * 119.60444 * 2 1 4 4 C 1.38612 * 119.17583 * 179.97438 * 3 2 1 5 5 C 1.38775 * 118.40932 * 0.02879 * 4 3 2 6 6 Cl 1.73598 * 120.43219 * 179.97438 * 5 4 3 7 7 C 1.38306 * 119.13743 * 359.97438 * 5 4 3 8 8 C 1.50698 * 119.62906 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47157 * 269.98036 * 8 7 5 10 10 C 1.50698 * 109.47157 * 179.97438 * 9 8 7 11 11 H 1.08008 * 119.99970 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00343 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99566 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00304 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47223 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47048 * 120.00311 * 14 12 10 17 17 H 1.48504 * 109.47329 * 240.00016 * 14 12 10 18 18 N 1.31854 * 119.60207 * 180.02562 * 2 1 3 19 19 H 1.08996 * 109.46903 * 269.99910 * 1 2 3 20 20 H 1.08994 * 109.46716 * 29.99568 * 1 2 3 21 21 H 1.08997 * 109.46994 * 149.99130 * 1 2 3 22 22 H 1.08001 * 120.41376 * 359.97438 * 3 2 1 23 23 H 1.08000 * 120.79333 * 179.97438 * 4 3 2 24 24 H 1.08999 * 109.47187 * 29.98052 * 8 7 5 25 25 H 1.09007 * 109.47367 * 149.97579 * 8 7 5 26 26 H 1.08996 * 109.46788 * 299.99381 * 9 8 7 27 27 H 1.08996 * 109.47215 * 59.99946 * 9 8 7 28 28 H 0.97008 * 120.00016 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1899 1.2018 0.0000 4 6 3.5760 1.1914 0.0005 5 6 4.2271 -0.0341 0.0005 6 17 5.9615 -0.1084 0.0004 7 6 3.4762 -1.1956 0.0004 8 6 4.1718 -2.5324 0.0009 9 6 4.4073 -2.9853 -1.4415 10 6 5.1035 -4.3219 -1.4410 11 1 5.3534 -4.8003 -0.5054 12 6 5.4214 -4.9341 -2.6347 13 7 5.1176 -4.3513 -3.7739 14 14 6.2850 -6.5905 -2.6341 15 1 6.5142 -7.0287 -1.2339 16 1 5.4382 -7.5904 -3.3329 17 1 7.5886 -6.4694 -3.3351 18 7 2.1584 -1.1464 -0.0005 19 1 -0.3633 0.0000 1.0276 20 1 -0.3632 0.8900 -0.5137 21 1 -0.3633 -0.8899 -0.5140 22 1 1.6502 2.1373 -0.0004 23 1 4.1358 2.1150 0.0001 24 1 5.1290 -2.4438 0.5147 25 1 3.5500 -3.2654 0.5150 26 1 3.4501 -3.0741 -1.9552 27 1 5.0291 -2.2524 -1.9555 28 1 5.3416 -4.7818 -4.6139 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261237062.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:28 Heat of formation + Delta-G solvation = 5.157518 kcal Electronic energy + Delta-G solvation = -12831.327935 eV Core-core repulsion = 10486.336830 eV Total energy + Delta-G solvation = -2344.991106 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.11423 -36.30675 -34.37390 -32.57720 -32.36067 -30.15321 -27.29956 -25.36606 -22.66991 -21.98443 -20.30899 -16.59782 -16.55931 -16.22526 -14.83744 -14.60478 -14.28047 -13.33516 -13.27152 -12.86742 -12.54854 -12.29037 -12.14062 -11.83023 -11.42303 -11.14256 -10.93025 -10.65056 -10.56692 -9.83350 -9.80205 -9.36243 -9.24652 -8.96966 -8.31130 -8.26667 -5.95925 -3.98265 1.18949 1.40363 2.42082 3.34491 3.41648 3.46057 3.88525 4.44976 4.52665 4.78817 4.93987 5.11482 5.40261 5.41176 5.57615 5.62774 5.80817 5.98180 6.06525 6.17605 6.52757 6.61818 6.75616 7.05578 7.71174 7.82499 8.03260 8.26630 8.43161 9.07838 9.65116 11.15536 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.031892 B = 0.007480 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.763736 B = 3742.200822 C = 4320.010553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.129 3.871 3 C -0.184 4.184 4 C -0.065 4.065 5 C -0.098 4.098 6 Cl -0.051 7.051 7 C 0.175 3.825 8 C -0.075 4.075 9 C 0.035 3.965 10 C -0.516 4.516 11 H 0.058 0.942 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 N -0.470 5.470 19 H 0.076 0.924 20 H 0.073 0.927 21 H 0.079 0.921 22 H 0.136 0.864 23 H 0.139 0.861 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 11.804 7.905 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.009 4.009 3 C -0.205 4.205 4 C -0.091 4.091 5 C -0.127 4.127 6 Cl -0.022 7.022 7 C 0.037 3.963 8 C -0.113 4.113 9 C -0.002 4.002 10 C -0.555 4.555 11 H 0.076 0.924 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 N -0.180 5.180 19 H 0.095 0.905 20 H 0.092 0.908 21 H 0.098 0.902 22 H 0.154 0.846 23 H 0.157 0.843 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.399 11.001 7.721 14.484 hybrid contribution 1.137 0.027 -0.212 1.157 sum -4.262 11.028 7.509 14.006 Atomic orbital electron populations 1.20697 0.88792 1.03548 1.02886 1.21423 0.97227 0.88431 0.93866 1.21789 0.93815 0.99333 1.05517 1.21438 0.94516 0.96835 0.96348 1.21892 0.86510 0.95609 1.08714 1.98366 1.08453 1.98608 1.96779 1.21836 0.88606 0.96039 0.89828 1.20963 0.98208 0.89025 1.03110 1.19016 0.97238 0.96178 0.87798 1.21218 1.37862 1.03960 0.92441 0.92413 1.25001 0.95995 0.97748 0.95613 1.69989 1.47566 1.38609 0.97236 0.86533 0.79286 0.84068 0.78102 1.19662 1.21045 1.21059 1.67623 1.08535 1.28674 1.13171 0.90503 0.90844 0.90194 0.84596 0.84312 0.90624 0.90814 0.96236 0.96149 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.17 36.01 0.37 -0.76 15 2 C 0.13 1.95 6.78 -82.58 -0.56 1.39 15 3 C -0.18 -2.42 9.74 -39.45 -0.38 -2.80 15 4 C -0.07 -0.93 9.98 -39.24 -0.39 -1.32 15 5 C -0.10 -1.72 6.34 -39.36 -0.25 -1.97 15 6 Cl -0.05 -0.87 27.33 -51.86 -1.42 -2.29 15 7 C 0.18 3.48 6.04 -82.55 -0.50 2.99 15 8 C -0.08 -1.66 5.05 -27.88 -0.14 -1.80 15 9 C 0.04 0.95 4.95 -27.88 -0.14 0.81 15 10 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 15 11 H 0.06 1.60 7.74 -52.48 -0.41 1.19 15 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 13 N -0.89 -27.40 13.29 55.43 0.74 -26.66 15 14 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 15 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 16 H -0.28 -6.93 7.11 56.52 0.40 -6.52 15 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 18 N -0.47 -8.98 10.19 -5.71 -0.06 -9.04 15 19 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.07 0.63 8.08 -51.93 -0.42 0.21 15 21 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.14 1.27 8.06 -52.49 -0.42 0.85 15 23 H 0.14 1.55 8.06 -52.49 -0.42 1.13 15 24 H 0.08 1.59 6.90 -51.93 -0.36 1.24 15 25 H 0.07 1.61 8.14 -51.92 -0.42 1.19 15 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 15 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 LS Contribution 263.13 15.07 3.97 3.97 Total: -1.00 -31.76 263.13 -7.48 -39.24 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: -3.28 Total: -5.10 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -2.41 Total: -17.04 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.68 Total: -35.70 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.42 Total: -2.29 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.76 -7.48 -39.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261237062.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.398 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds