Wall clock time and date at job start Mon Mar 30 2020 03:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47002 * 111.00204 * 2 1 4 4 C 1.53187 * 109.67847 * 286.89978 * 3 2 1 5 5 O 1.43582 * 108.69097 * 294.94018 * 4 3 2 6 6 C 1.36465 * 114.23436 * 45.07076 * 5 4 3 7 7 S 1.75424 * 126.22284 * 165.45645 * 6 5 4 8 8 C 1.75739 * 91.35590 * 180.02562 * 7 6 5 9 9 C 1.39776 * 125.16445 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00154 * 180.25082 * 9 8 7 11 11 C 1.39795 * 119.99788 * 0.24680 * 9 8 7 12 12 N 1.31078 * 120.00376 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99540 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47421 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46882 * 120.00419 * 13 11 9 16 16 H 1.48495 * 109.47189 * 240.00134 * 13 11 9 17 17 C 1.37931 * 109.67051 * 0.27591 * 8 7 6 18 18 C 1.37349 * 115.07172 * 359.75236 * 17 8 7 19 19 H 1.09003 * 109.46600 * 59.99876 * 1 2 3 20 20 H 1.08990 * 109.47158 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46879 * 299.99918 * 1 2 3 22 22 H 1.08998 * 109.43503 * 166.83467 * 3 2 1 23 23 H 1.09001 * 109.43226 * 46.96819 * 3 2 1 24 24 H 1.08991 * 109.60381 * 175.17568 * 4 3 2 25 25 H 1.09007 * 109.59781 * 54.69823 * 4 3 2 26 26 H 0.96998 * 119.99836 * 180.02562 * 12 11 9 27 27 H 1.08000 * 122.47125 * 179.72503 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 1.7893 2.0042 -1.3801 5 8 2.5830 1.2871 -2.3380 6 6 2.5076 -0.0707 -2.2235 7 16 3.0397 -1.2426 -3.4155 8 6 2.5409 -2.5774 -2.3870 9 6 2.6673 -3.9319 -2.7081 10 1 2.3282 -4.6856 -2.0130 11 6 3.2327 -4.3109 -3.9292 12 7 3.6447 -3.3962 -4.7728 13 14 3.4022 -6.1212 -4.3580 14 1 2.8661 -6.9458 -3.2454 15 1 2.6395 -6.4093 -5.5992 16 1 4.8352 -6.4474 -4.5706 17 6 2.0007 -2.0855 -1.2171 18 6 1.9784 -0.7158 -1.1172 19 1 -0.3632 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 3.0603 1.3522 0.2341 23 1 1.4710 1.9623 0.7514 24 1 2.1017 3.0481 -1.3548 25 1 0.7369 1.9416 -1.6571 26 1 4.0366 -3.6592 -5.6201 27 1 1.6226 -2.7297 -0.4372 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261264621.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:36 Heat of formation + Delta-G solvation = -14.139380 kcal Electronic energy + Delta-G solvation = -13407.767115 eV Core-core repulsion = 11063.982940 eV Total energy + Delta-G solvation = -2343.784176 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.34542 -35.59897 -34.61936 -33.14773 -29.26578 -27.95768 -25.59466 -23.72316 -23.06280 -20.36306 -18.07511 -17.67344 -16.09676 -15.97423 -15.04026 -14.39763 -14.06133 -13.61795 -13.49944 -13.19700 -12.86118 -11.78625 -11.68289 -11.59142 -11.37468 -11.21282 -11.14617 -10.61445 -10.31767 -10.20563 -10.09419 -9.21695 -9.03198 -8.09786 -6.99147 -6.93387 -6.52272 -4.38636 2.56854 2.95724 3.01831 3.03709 3.13514 3.73786 3.91645 4.01791 4.54089 4.98930 5.02224 5.28251 5.48299 5.55352 5.78021 5.91965 6.01432 6.24447 6.30643 6.65420 6.89789 7.20903 7.33722 7.51713 7.82950 7.95418 8.15832 8.28071 8.61769 8.68212 9.89520 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.054111 B = 0.008650 C = 0.007686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.332946 B = 3236.396097 C = 3642.054135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.471 5.471 3 C 0.020 3.980 4 C 0.024 3.976 5 O -0.289 6.289 6 C -0.236 4.236 7 S 0.214 5.786 8 C 0.021 3.979 9 C -0.388 4.388 10 H 0.095 0.905 11 C 0.050 3.950 12 N -0.799 5.799 13 Si 0.936 3.064 14 H -0.258 1.258 15 H -0.271 1.271 16 H -0.270 1.270 17 C -0.312 4.312 18 C 0.049 3.951 19 H 0.024 0.976 20 H 0.071 0.929 21 H 0.060 0.940 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.048 0.952 26 H 0.297 0.703 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 3.177 2.397 4.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.189 5.189 3 C -0.108 4.108 4 C -0.057 4.057 5 O -0.204 6.204 6 C -0.396 4.396 7 S 0.472 5.528 8 C -0.099 4.099 9 C -0.424 4.424 10 H 0.113 0.887 11 C -0.168 4.168 12 N -0.429 5.429 13 Si 0.760 3.240 14 H -0.182 1.182 15 H -0.196 1.196 16 H -0.195 1.195 17 C -0.338 4.338 18 C -0.056 4.056 19 H 0.042 0.958 20 H 0.090 0.910 21 H 0.078 0.922 22 H 0.101 0.899 23 H 0.096 0.904 24 H 0.110 0.890 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.600 3.226 1.141 3.778 hybrid contribution -1.043 -0.321 0.797 1.351 sum -2.643 2.906 1.939 4.380 Atomic orbital electron populations 1.22430 0.87616 1.02391 0.99392 1.60603 1.07144 1.11646 1.39526 1.22755 1.01941 0.89717 0.96429 1.23193 0.95352 0.96039 0.91123 1.86486 1.65491 1.14452 1.53945 1.25427 1.24653 0.86368 1.03182 1.84715 1.63109 0.90717 1.14265 1.21395 0.97483 0.96207 0.94840 1.19025 1.31200 0.91230 1.00959 0.88664 1.26136 0.93576 1.01592 0.95492 1.68638 1.30195 1.35216 1.08859 0.85751 0.78922 0.79998 0.79314 1.18185 1.19590 1.19536 1.18859 1.22084 0.91520 1.01350 1.18484 1.05844 0.93020 0.88259 0.95782 0.91010 0.92159 0.89897 0.90437 0.89017 0.93420 0.89033 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.34 60.07 0.56 1.08 15 2 N -0.47 -9.94 5.20 -178.53 -0.93 -10.87 15 3 C 0.02 0.37 5.88 -3.67 -0.02 0.35 15 4 C 0.02 0.44 6.98 37.25 0.26 0.70 15 5 O -0.29 -6.82 10.73 -21.24 -0.23 -7.04 15 6 C -0.24 -6.05 7.41 30.85 0.23 -5.83 15 7 S 0.21 5.58 20.18 -107.50 -2.17 3.41 15 8 C 0.02 0.58 6.16 -39.12 -0.24 0.34 15 9 C -0.39 -9.97 9.26 -38.43 -0.36 -10.33 15 10 H 0.10 2.32 7.84 -52.49 -0.41 1.91 15 11 C 0.05 1.18 5.49 -17.29 -0.10 1.09 15 12 N -0.80 -19.61 10.62 55.54 0.59 -19.02 15 13 Si 0.94 17.80 29.56 -169.99 -5.03 12.78 15 14 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 15 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 16 H -0.27 -5.06 7.11 56.52 0.40 -4.65 15 17 C -0.31 -8.18 10.05 -40.02 -0.40 -8.58 15 18 C 0.05 1.23 5.18 -83.27 -0.43 0.80 15 19 H 0.02 0.43 6.69 -51.93 -0.35 0.08 15 20 H 0.07 1.30 8.07 -51.93 -0.42 0.88 15 21 H 0.06 0.87 8.10 -51.93 -0.42 0.45 15 22 H 0.08 1.56 8.14 -51.93 -0.42 1.14 15 23 H 0.08 1.11 8.01 -51.93 -0.42 0.69 15 24 H 0.09 1.35 8.14 -51.93 -0.42 0.93 15 25 H 0.05 0.86 6.67 -51.92 -0.35 0.52 15 26 H 0.30 6.53 8.30 -40.82 -0.34 6.19 15 27 H 0.10 2.67 8.06 -52.49 -0.42 2.24 15 LS Contribution 241.39 15.07 3.64 3.64 Total: -1.00 -28.81 241.39 -7.38 -36.20 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -2.76 Total: 1.30 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -0.50 Total: -20.39 kcal Atomic # 7 Polarization: -29.54 SS G_CDS: -0.34 Total: -29.88 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.23 Total: -7.04 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 16 Polarization: 5.58 SS G_CDS: -2.17 Total: 3.41 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.81 -7.38 -36.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264621.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.057 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds