Wall clock time and date at job start Mon Mar 30 2020 03:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47002 * 111.00204 * 2 1 4 4 C 1.53187 * 109.67847 * 286.89978 * 3 2 1 5 5 O 1.43582 * 108.69097 * 294.94018 * 4 3 2 6 6 C 1.36465 * 114.23436 * 45.07076 * 5 4 3 7 7 S 1.75424 * 126.22284 * 165.45645 * 6 5 4 8 8 C 1.75739 * 91.35590 * 180.02562 * 7 6 5 9 9 C 1.39776 * 125.16445 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00154 * 180.25082 * 9 8 7 11 11 C 1.39795 * 119.99788 * 0.24680 * 9 8 7 12 12 N 1.31078 * 120.00376 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99540 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47421 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46882 * 120.00419 * 13 11 9 16 16 H 1.48495 * 109.47189 * 240.00134 * 13 11 9 17 17 C 1.37931 * 109.67051 * 0.27591 * 8 7 6 18 18 C 1.37349 * 115.07172 * 359.75236 * 17 8 7 19 19 H 1.09003 * 109.46600 * 59.99876 * 1 2 3 20 20 H 1.08990 * 109.47158 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46879 * 299.99918 * 1 2 3 22 22 H 1.08998 * 109.43503 * 166.83467 * 3 2 1 23 23 H 1.09001 * 109.43226 * 46.96819 * 3 2 1 24 24 H 1.08991 * 109.60381 * 175.17568 * 4 3 2 25 25 H 1.09007 * 109.59781 * 54.69823 * 4 3 2 26 26 H 0.96998 * 119.99836 * 180.02562 * 12 11 9 27 27 H 1.08000 * 122.47125 * 179.72503 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 1.7893 2.0042 -1.3801 5 8 2.5830 1.2871 -2.3380 6 6 2.5076 -0.0707 -2.2235 7 16 3.0397 -1.2426 -3.4155 8 6 2.5409 -2.5774 -2.3870 9 6 2.6673 -3.9319 -2.7081 10 1 2.3282 -4.6856 -2.0130 11 6 3.2327 -4.3109 -3.9292 12 7 3.6447 -3.3962 -4.7728 13 14 3.4022 -6.1212 -4.3580 14 1 2.8661 -6.9458 -3.2454 15 1 2.6395 -6.4093 -5.5992 16 1 4.8352 -6.4474 -4.5706 17 6 2.0007 -2.0855 -1.2171 18 6 1.9784 -0.7158 -1.1172 19 1 -0.3632 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 3.0603 1.3522 0.2341 23 1 1.4710 1.9623 0.7514 24 1 2.1017 3.0481 -1.3548 25 1 0.7369 1.9416 -1.6571 26 1 4.0366 -3.6592 -5.6201 27 1 1.6226 -2.7297 -0.4372 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261264621.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:35 Heat of formation + Delta-G solvation = -33.468348 kcal Electronic energy + Delta-G solvation = -13408.605282 eV Core-core repulsion = 11063.982940 eV Total energy + Delta-G solvation = -2344.622343 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.01742 -37.39900 -36.39380 -34.97535 -30.96418 -29.62344 -27.29385 -25.44596 -24.75952 -22.15587 -19.97017 -19.37961 -17.94609 -17.66160 -16.66798 -16.05633 -15.70504 -15.30807 -15.12708 -14.87402 -14.57489 -13.45456 -13.33153 -13.25125 -12.92867 -12.83530 -12.79222 -12.29152 -11.92568 -11.86187 -11.78172 -11.08143 -10.95646 -9.78608 -8.89928 -8.81422 -8.43657 -6.35078 0.71177 1.19853 1.40343 1.47949 1.58892 1.94563 2.10834 2.19640 2.95142 3.09581 3.39329 3.85695 4.10527 4.17430 4.44934 4.48854 4.63993 4.76314 4.83801 4.93731 5.03594 5.46006 5.48360 5.62455 6.05562 6.14022 6.26847 6.41602 6.67362 6.84036 8.09005 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.054111 B = 0.008650 C = 0.007686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.332946 B = 3236.396097 C = 3642.054135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.485 5.485 3 C 0.020 3.980 4 C 0.017 3.983 5 O -0.310 6.310 6 C -0.253 4.253 7 S 0.183 5.817 8 C 0.000 4.000 9 C -0.416 4.416 10 H 0.100 0.900 11 C 0.013 3.987 12 N -0.819 5.819 13 Si 1.014 2.986 14 H -0.254 1.254 15 H -0.261 1.261 16 H -0.261 1.261 17 C -0.340 4.340 18 C 0.050 3.950 19 H 0.021 0.979 20 H 0.059 0.941 21 H 0.102 0.898 22 H 0.070 0.930 23 H 0.124 0.876 24 H 0.133 0.867 25 H 0.051 0.949 26 H 0.309 0.691 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.004 3.160 2.789 5.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.204 5.204 3 C -0.108 4.108 4 C -0.063 4.063 5 O -0.226 6.226 6 C -0.413 4.413 7 S 0.441 5.559 8 C -0.120 4.120 9 C -0.451 4.451 10 H 0.118 0.882 11 C -0.202 4.202 12 N -0.448 5.448 13 Si 0.832 3.168 14 H -0.177 1.177 15 H -0.185 1.185 16 H -0.185 1.185 17 C -0.367 4.367 18 C -0.055 4.055 19 H 0.039 0.961 20 H 0.078 0.922 21 H 0.120 0.880 22 H 0.089 0.911 23 H 0.142 0.858 24 H 0.150 0.850 25 H 0.070 0.930 26 H 0.122 0.878 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.023 3.253 1.552 4.133 hybrid contribution -0.924 -0.243 0.698 1.183 sum -2.947 3.010 2.251 4.776 Atomic orbital electron populations 1.22485 0.85500 1.02329 1.01217 1.60584 1.08986 1.13280 1.37527 1.22899 1.01867 0.88581 0.97494 1.23582 0.95154 0.97420 0.90105 1.86422 1.66832 1.13473 1.55854 1.25393 1.25362 0.87408 1.03151 1.84509 1.64335 0.91586 1.15498 1.21759 0.97882 0.97075 0.95301 1.19389 1.32314 0.91036 1.02365 0.88192 1.27165 0.92095 1.06523 0.94455 1.68703 1.29271 1.37501 1.09364 0.84640 0.79311 0.73567 0.79266 1.17710 1.18492 1.18542 1.18994 1.23658 0.92507 1.01509 1.18634 1.04948 0.92840 0.89116 0.96068 0.92204 0.88000 0.91110 0.85783 0.84962 0.93044 0.87817 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 9.34 127.69 1.19 2.25 15 2 N -0.48 -19.86 5.20 -718.74 -3.74 -23.60 15 3 C 0.02 0.66 5.88 86.35 0.51 1.16 15 4 C 0.02 0.58 6.98 72.04 0.50 1.08 15 5 O -0.31 -14.55 10.73 -98.90 -1.06 -15.62 15 6 C -0.25 -13.17 7.41 67.90 0.50 -12.67 15 7 S 0.18 9.86 20.18 -56.49 -1.14 8.72 15 8 C 0.00 0.02 6.16 22.57 0.14 0.16 15 9 C -0.42 -21.73 9.26 23.02 0.21 -21.52 15 10 H 0.10 4.96 7.84 -2.91 -0.02 4.94 15 11 C 0.01 0.63 5.49 85.18 0.47 1.10 15 12 N -0.82 -40.27 10.62 21.82 0.23 -40.04 15 13 Si 1.01 35.44 29.56 68.60 2.03 37.47 15 14 H -0.25 -8.64 7.11 99.48 0.71 -7.93 15 15 H -0.26 -8.67 7.11 99.48 0.71 -7.96 15 16 H -0.26 -8.72 7.11 99.48 0.71 -8.02 15 17 C -0.34 -18.39 10.05 21.99 0.22 -18.17 15 18 C 0.05 2.54 5.18 37.34 0.19 2.73 15 19 H 0.02 0.71 6.69 -2.39 -0.02 0.70 15 20 H 0.06 2.13 8.07 -2.39 -0.02 2.11 15 21 H 0.10 2.56 8.10 -2.39 -0.02 2.54 15 22 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 23 H 0.12 2.99 8.01 -2.39 -0.02 2.97 15 24 H 0.13 3.43 8.14 -2.39 -0.02 3.41 15 25 H 0.05 1.74 6.67 -2.38 -0.02 1.73 15 26 H 0.31 13.41 8.30 -92.71 -0.77 12.64 15 27 H 0.10 5.35 8.06 -2.91 -0.02 5.33 15 Total: -1.00 -63.40 241.39 1.44 -61.96 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.18 Total: 14.97 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 3.94 Total: -43.87 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -3.50 Total: -63.63 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -1.06 Total: -15.62 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.47 kcal Atomic # 16 Polarization: 9.86 SS G_CDS: -1.14 Total: 8.72 kcal Total: -63.40 1.44 -61.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264621.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.488 kcal (2) G-P(sol) polarization free energy of solvation -63.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds