Wall clock time and date at job start Mon Mar 30 2020 03:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.46744 * 55.00219 * 10 9 7 12 12 N 1.46895 * 109.47374 * 295.00540 * 10 9 7 13 13 C 1.50703 * 109.47148 * 175.00254 * 10 9 7 14 14 C 1.38232 * 120.00244 * 100.00262 * 13 10 9 15 15 C 1.38223 * 120.01019 * 179.97438 * 14 13 10 16 16 C 1.38268 * 120.02509 * 0.03630 * 15 14 13 17 17 C 1.38193 * 120.01481 * 359.97438 * 16 15 14 18 18 C 1.38331 * 120.00441 * 279.72921 * 13 10 9 19 19 Cl 1.73594 * 120.01370 * 359.97438 * 18 13 10 20 20 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 22 22 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 23 23 H 1.00895 * 111.00453 * 176.04277 * 12 10 9 24 24 H 1.00905 * 110.99912 * 299.99779 * 12 10 9 25 25 H 1.08000 * 119.99632 * 359.97438 * 14 13 10 26 26 H 1.07995 * 119.98875 * 180.02562 * 15 14 13 27 27 H 1.08002 * 119.99333 * 179.97438 * 16 15 14 28 28 H 1.07992 * 120.00963 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9295 -3.5551 0.8414 12 7 3.0086 -3.6538 -1.2556 13 6 1.4960 -4.9637 0.1232 14 6 1.2542 -5.7316 -1.0005 15 6 0.5673 -6.9257 -0.8870 16 6 0.1212 -7.3525 0.3502 17 6 0.3623 -6.5855 1.4742 18 6 1.0551 -5.3930 1.3621 19 17 1.3654 -4.4329 2.7747 20 1 -0.4851 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6248 -2.5571 0.8896 23 1 3.7163 -4.3729 -1.2533 24 1 2.3964 -3.7517 -2.0518 25 1 1.6019 -5.3985 -1.9672 26 1 0.3789 -7.5256 -1.7651 27 1 -0.4158 -8.2854 0.4381 28 1 0.0142 -6.9191 2.4405 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261270428.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:32 Heat of formation + Delta-G solvation = -10.558566 kcal Electronic energy + Delta-G solvation = -13104.655552 eV Core-core repulsion = 10758.982946 eV Total energy + Delta-G solvation = -2345.672606 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.56688 -37.31758 -36.95694 -34.55148 -31.72991 -31.04900 -30.16005 -26.30541 -23.77444 -23.39486 -21.24031 -18.65090 -17.90671 -17.08747 -16.55932 -16.22411 -16.00049 -14.97087 -14.75701 -14.50984 -14.31928 -14.04250 -13.20284 -12.90146 -12.71362 -12.50220 -12.43024 -12.31499 -11.98591 -11.69897 -11.51278 -11.16360 -10.48793 -9.83157 -9.54202 -9.45604 -8.10153 -6.15856 0.23808 0.33748 1.28995 1.41826 1.44936 1.52411 2.47122 2.71113 3.23037 3.80899 3.82803 3.94337 4.12750 4.42507 4.46464 4.61381 4.72595 4.89182 5.03476 5.30970 5.39379 5.46118 5.53408 5.71581 5.88029 5.92058 6.30744 6.48848 6.80033 6.97235 7.49918 9.01646 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035735 B = 0.008188 C = 0.007437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.361727 B = 3418.678914 C = 3764.025724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.004 4.004 3 Si 0.958 3.042 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.504 4.504 8 H 0.058 0.942 9 C 0.050 3.950 10 C 0.144 3.856 11 H 0.070 0.930 12 N -0.828 5.828 13 C -0.117 4.117 14 C -0.126 4.126 15 C -0.109 4.109 16 C -0.114 4.114 17 C -0.116 4.116 18 C -0.053 4.053 19 Cl -0.081 7.081 20 H 0.259 0.741 21 H -0.015 1.015 22 H 0.002 0.998 23 H 0.342 0.658 24 H 0.340 0.660 25 H 0.137 0.863 26 H 0.160 0.840 27 H 0.166 0.834 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 -15.834 -0.115 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.012 3.988 10 C 0.032 3.968 11 H 0.088 0.912 12 N -0.359 5.359 13 C -0.120 4.120 14 C -0.144 4.144 15 C -0.126 4.126 16 C -0.132 4.132 17 C -0.135 4.135 18 C -0.080 4.080 19 Cl -0.053 7.053 20 H 0.068 0.932 21 H 0.003 0.997 22 H 0.021 0.979 23 H 0.156 0.844 24 H 0.155 0.845 25 H 0.155 0.845 26 H 0.178 0.822 27 H 0.183 0.817 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.667 -14.874 0.211 14.969 hybrid contribution -0.194 0.371 0.168 0.451 sum 1.473 -14.503 0.378 14.583 Atomic orbital electron populations 1.70093 1.07575 1.27279 1.53101 1.25856 0.95628 1.02840 0.95656 0.85608 0.78254 0.78850 0.78917 1.19445 1.21186 1.19651 1.21434 0.93293 0.91472 1.48054 0.92406 1.18880 0.93092 0.91998 0.94807 1.20353 0.93910 0.89736 0.92821 0.91191 1.58662 1.18250 1.55566 1.03385 1.21124 0.99775 0.98224 0.92835 1.21206 1.00201 0.95440 0.97574 1.21592 0.96347 0.95548 0.99160 1.21492 0.99739 1.00674 0.91294 1.21358 0.98088 0.92654 1.01404 1.21094 1.03987 0.95008 0.87957 1.98362 1.94584 1.72216 1.40094 0.93217 0.99678 0.97946 0.84447 0.84490 0.84509 0.82242 0.81693 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.70 13.29 21.45 0.28 -58.41 15 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 15 3 Si 0.96 46.31 29.54 68.60 2.03 48.33 15 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 15 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 15 6 H -0.27 -12.70 7.11 99.48 0.71 -11.99 15 7 C -0.50 -29.39 8.84 25.60 0.23 -29.17 15 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 15 9 C 0.05 2.65 4.55 29.85 0.14 2.79 15 10 C 0.14 6.04 2.38 44.17 0.11 6.14 15 11 H 0.07 3.12 7.34 -2.38 -0.02 3.10 15 12 N -0.83 -30.34 8.43 -171.79 -1.45 -31.78 15 13 C -0.12 -4.13 5.08 -19.84 -0.10 -4.23 15 14 C -0.13 -3.57 9.25 22.26 0.21 -3.36 15 15 C -0.11 -2.38 10.05 22.27 0.22 -2.16 15 16 C -0.11 -2.40 10.05 22.27 0.22 -2.18 15 17 C -0.12 -3.07 9.83 22.29 0.22 -2.85 15 18 C -0.05 -1.82 6.31 22.32 0.14 -1.68 15 19 Cl -0.08 -2.98 26.68 -2.72 -0.07 -3.06 15 20 H 0.26 15.37 8.31 -92.71 -0.77 14.59 15 21 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 15 22 H 0.00 0.13 7.33 -2.39 -0.02 0.11 15 23 H 0.34 10.18 9.06 -89.70 -0.81 9.37 15 24 H 0.34 11.69 7.29 -89.69 -0.65 11.04 15 25 H 0.14 3.46 6.25 -2.91 -0.02 3.44 15 26 H 0.16 2.32 8.06 -2.91 -0.02 2.30 15 27 H 0.17 2.17 8.06 -2.91 -0.02 2.14 15 28 H 0.15 3.20 8.06 -2.91 -0.02 3.18 15 Total: -1.00 -68.70 256.67 2.35 -66.35 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -0.28 Total: 15.00 kcal Atomic # 6 Polarization: -38.28 SS G_CDS: 1.84 Total: -36.44 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -1.16 Total: -90.20 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Atomic # 17 Polarization: -2.98 SS G_CDS: -0.07 Total: -3.06 kcal Total: -68.70 2.35 -66.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270428.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.792 kcal (2) G-P(sol) polarization free energy of solvation -68.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds