Wall clock time and date at job start Mon Mar 30 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00022 * 2 1 4 4 H 1.48503 * 109.47392 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47181 * 299.99512 * 3 2 1 6 6 H 1.48501 * 109.47192 * 59.99665 * 3 2 1 7 7 C 1.37878 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00262 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99685 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46854 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47719 * 305.00422 * 10 9 7 12 12 N 1.46904 * 109.47195 * 65.00141 * 10 9 7 13 13 C 1.50701 * 109.47057 * 185.00012 * 10 9 7 14 14 C 1.38235 * 120.00701 * 265.02526 * 13 10 9 15 15 C 1.38223 * 120.01505 * 179.97438 * 14 13 10 16 16 C 1.38263 * 120.02356 * 359.97438 * 15 14 13 17 17 C 1.38197 * 120.01270 * 359.74133 * 16 15 14 18 18 C 1.38335 * 120.00592 * 85.00403 * 13 10 9 19 19 Cl 1.73599 * 120.01202 * 359.97438 * 18 13 10 20 20 H 0.97004 * 119.99933 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46753 * 60.00174 * 9 7 2 22 22 H 1.08995 * 109.46922 * 299.99613 * 9 7 2 23 23 H 1.00903 * 110.99857 * 296.04742 * 12 10 9 24 24 H 1.00896 * 110.99895 * 59.99955 * 12 10 9 25 25 H 1.08004 * 119.99202 * 359.97438 * 14 13 10 26 26 H 1.07991 * 119.98575 * 179.97438 * 15 14 13 27 27 H 1.07997 * 119.99306 * 179.97438 * 16 15 14 28 28 H 1.08000 * 120.00345 * 180.25357 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9295 -3.5552 -0.8412 12 7 3.0084 -3.6539 1.2558 13 6 1.4959 -4.9636 -0.1233 14 6 1.1629 -5.6803 1.0109 15 6 0.4751 -6.8739 0.8976 16 6 0.1193 -7.3515 -0.3502 17 6 0.4465 -6.6330 -1.4845 18 6 1.1407 -5.4413 -1.3720 19 17 1.5575 -4.5413 -2.7968 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 3.5700 -2.8191 1.3321 24 1 2.3961 -3.7517 2.0518 25 1 1.4403 -5.3074 1.9859 26 1 0.2156 -7.4335 1.7839 27 1 -0.4177 -8.2843 -0.4382 28 1 0.1649 -7.0041 -2.4588 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261270429.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:34 Heat of formation + Delta-G solvation = 3.812353 kcal Electronic energy + Delta-G solvation = -13098.040992 eV Core-core repulsion = 10752.991555 eV Total energy + Delta-G solvation = -2345.049437 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.19125 -35.95132 -35.45765 -32.51068 -30.42399 -29.91683 -27.96921 -24.61520 -22.27562 -22.07959 -19.70901 -17.18201 -16.31496 -15.45820 -14.92212 -14.62272 -14.28398 -13.48495 -13.31342 -13.05371 -12.43276 -12.29237 -11.91366 -11.30074 -11.21308 -11.07928 -10.90379 -10.68399 -10.33777 -10.15390 -9.93050 -9.13426 -8.56408 -8.45779 -8.32366 -7.70463 -6.06730 -4.10762 1.50677 1.63752 2.61793 3.26730 3.34924 3.38268 3.98441 4.40081 5.06219 5.10997 5.24836 5.29184 5.41416 5.70796 5.84172 5.99713 6.12138 6.37023 6.51983 6.68789 6.72289 6.87582 7.13076 7.49343 7.57725 7.86706 8.03030 8.19333 8.32705 8.95604 9.54019 11.04094 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035481 B = 0.008131 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.964824 B = 3442.745806 C = 3772.371926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.003 3.997 10 C 0.120 3.880 11 H 0.086 0.914 12 N -0.840 5.840 13 C -0.041 4.041 14 C -0.100 4.100 15 C -0.120 4.120 16 C -0.128 4.128 17 C -0.114 4.114 18 C -0.035 4.035 19 Cl -0.066 7.066 20 H 0.260 0.740 21 H 0.026 0.974 22 H 0.015 0.985 23 H 0.348 0.652 24 H 0.328 0.672 25 H 0.130 0.870 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.075 -11.964 -0.295 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.035 4.035 10 C 0.009 3.991 11 H 0.104 0.896 12 N -0.369 5.369 13 C -0.043 4.043 14 C -0.118 4.118 15 C -0.138 4.138 16 C -0.146 4.146 17 C -0.133 4.133 18 C -0.062 4.062 19 Cl -0.037 7.037 20 H 0.070 0.930 21 H 0.044 0.956 22 H 0.033 0.967 23 H 0.162 0.838 24 H 0.140 0.860 25 H 0.148 0.852 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.329 -12.414 -0.714 12.506 hybrid contribution -0.264 1.940 0.041 1.959 sum 1.064 -10.474 -0.674 10.550 Atomic orbital electron populations 1.69982 1.06092 1.26585 1.50275 1.24998 0.94799 0.99240 0.95104 0.86549 0.80155 0.83792 0.77594 1.19633 1.20997 1.21057 1.21159 0.92880 0.90697 1.51297 0.92482 1.19758 0.94331 0.91371 0.98053 1.20626 0.95016 0.90206 0.93251 0.89623 1.59303 1.27882 1.46005 1.03758 1.20097 0.96426 0.96724 0.91006 1.20950 0.97891 0.94513 0.98451 1.21171 0.98705 0.96499 0.97412 1.20941 1.01524 1.00020 0.92158 1.20941 0.99074 0.93900 0.99398 1.20802 1.02828 0.94557 0.88057 1.98363 1.92171 1.74794 1.38402 0.92983 0.95555 0.96678 0.83790 0.86018 0.85179 0.86034 0.85871 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.71 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 15 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 7 C -0.52 -14.17 8.55 -34.44 -0.29 -14.47 15 8 H 0.06 1.50 7.15 -52.49 -0.38 1.13 15 9 C 0.00 0.08 4.60 -27.88 -0.13 -0.05 15 10 C 0.12 2.50 2.50 -68.86 -0.17 2.33 15 11 H 0.09 1.88 7.13 -51.93 -0.37 1.51 15 12 N -0.84 -15.67 8.79 -5.65 -0.05 -15.72 15 13 C -0.04 -0.77 5.06 -104.59 -0.53 -1.30 15 14 C -0.10 -1.62 9.27 -39.59 -0.37 -1.99 15 15 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 15 16 C -0.13 -1.70 10.05 -39.59 -0.40 -2.09 15 17 C -0.11 -1.70 9.83 -39.55 -0.39 -2.09 15 18 C -0.04 -0.63 6.31 -39.50 -0.25 -0.88 15 19 Cl -0.07 -1.20 27.20 -51.86 -1.41 -2.61 15 20 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 21 H 0.03 0.72 7.94 -51.93 -0.41 0.31 15 22 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 15 23 H 0.35 6.63 7.90 -39.29 -0.31 6.32 15 24 H 0.33 5.73 7.21 -39.29 -0.28 5.45 15 25 H 0.13 1.97 6.29 -52.48 -0.33 1.64 15 26 H 0.12 1.31 8.06 -52.49 -0.42 0.89 15 27 H 0.12 1.24 8.06 -52.49 -0.42 0.82 15 28 H 0.13 1.59 8.06 -52.49 -0.42 1.16 15 LS Contribution 256.06 15.07 3.86 3.86 Total: -1.00 -29.56 256.06 -7.82 -37.37 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -2.91 Total: 7.48 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -3.02 Total: -20.98 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.69 Total: -41.43 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.41 Total: -2.61 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.56 -7.82 -37.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270429.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.184 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds