Wall clock time and date at job start Mon Mar 30 2020 03:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38312 * 119.96609 * 2 1 4 4 C 1.38248 * 120.15467 * 180.02562 * 3 2 1 5 5 C 1.38165 * 120.09360 * 359.73958 * 4 3 2 6 6 C 1.38833 * 119.93603 * 0.53451 * 5 4 3 7 7 N 1.39755 * 120.07972 * 179.74619 * 6 5 4 8 8 C 1.46499 * 119.99867 * 359.72193 * 7 6 5 9 9 C 1.50697 * 109.47276 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99866 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99925 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00389 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99821 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46851 * 90.00139 * 13 11 9 15 15 H 1.48501 * 109.47218 * 209.99776 * 13 11 9 16 16 H 1.48503 * 109.47376 * 330.00226 * 13 11 9 17 17 C 1.38161 * 119.96949 * 180.02562 * 2 1 3 18 18 Cl 1.73601 * 120.04991 * 359.97438 * 17 2 1 19 19 H 1.09003 * 109.47273 * 269.98090 * 1 2 3 20 20 H 1.08998 * 109.47089 * 29.97795 * 1 2 3 21 21 H 1.08999 * 109.47443 * 149.97969 * 1 2 3 22 22 H 1.08003 * 119.92675 * 359.97438 * 3 2 1 23 23 H 1.08003 * 119.95681 * 179.97438 * 4 3 2 24 24 H 1.08006 * 120.03104 * 180.25455 * 5 4 3 25 25 H 0.96999 * 120.00148 * 179.72472 * 7 6 5 26 26 H 1.09004 * 109.47024 * 300.00438 * 8 7 6 27 27 H 1.09005 * 109.47136 * 60.00054 * 8 7 6 28 28 H 0.96998 * 120.00132 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1982 0.0000 4 6 3.5803 1.2028 -0.0005 5 6 4.2770 0.0097 0.0044 6 6 3.5875 -1.1953 -0.0014 7 7 4.2892 -2.4039 -0.0018 8 6 5.7542 -2.4003 -0.0023 9 6 6.2601 -3.8198 -0.0034 10 1 5.5603 -4.6425 -0.0032 11 6 7.6163 -4.0684 -0.0035 12 7 8.4684 -3.0667 -0.0022 13 14 8.2433 -5.8280 -0.0040 14 1 8.4094 -6.2938 -1.4043 15 1 9.5516 -5.8875 0.6959 16 1 7.2673 -6.7016 0.6957 17 6 2.1972 -1.1969 -0.0005 18 17 1.3297 -2.7006 -0.0005 19 1 -0.3634 -0.0003 1.0277 20 1 -0.3633 0.8902 -0.5135 21 1 -0.3634 -0.8898 -0.5141 22 1 1.6561 2.1325 -0.0004 23 1 4.1166 2.1403 -0.0010 24 1 5.3571 0.0144 0.0081 25 1 3.8063 -3.2451 -0.0018 26 1 6.1160 -1.8854 -0.8924 27 1 6.1166 -1.8857 0.8876 28 1 9.4225 -3.2416 -0.0019 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300906991.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:11 Heat of formation + Delta-G solvation = 1.463670 kcal Electronic energy + Delta-G solvation = -12808.107454 eV Core-core repulsion = 10462.956171 eV Total energy + Delta-G solvation = -2345.151283 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.11221 -35.96020 -35.36426 -32.81997 -31.73518 -29.38584 -26.55564 -26.32883 -22.81999 -21.90167 -20.00726 -17.39891 -16.18973 -15.61082 -15.23977 -14.56520 -14.01670 -13.67090 -13.22597 -12.98059 -12.95683 -12.11871 -12.03255 -11.94989 -11.37318 -11.09994 -10.94945 -10.89796 -10.88211 -10.36031 -10.13028 -9.47312 -9.43175 -8.57159 -8.22538 -6.66068 -6.23895 -4.29096 1.67146 2.03009 2.67180 3.21806 3.28120 3.31360 4.18946 4.20620 4.46203 5.10016 5.13590 5.25422 5.61591 5.65540 5.74527 5.87069 5.96132 6.14132 6.36100 6.67813 6.74913 6.96894 7.03591 7.29298 7.36108 7.59437 7.89303 8.17182 8.57749 8.83913 9.37323 10.86703 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.041041 B = 0.006895 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.082805 B = 4059.949174 C = 4721.584519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.031 4.031 3 C -0.197 4.197 4 C -0.061 4.061 5 C -0.200 4.200 6 C 0.247 3.753 7 N -0.720 5.720 8 C 0.249 3.751 9 C -0.540 4.540 10 H 0.062 0.938 11 C 0.065 3.935 12 N -0.889 5.889 13 Si 0.904 3.096 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.272 1.272 17 C -0.135 4.135 18 Cl -0.086 7.086 19 H 0.070 0.930 20 H 0.065 0.935 21 H 0.069 0.931 22 H 0.117 0.883 23 H 0.119 0.881 24 H 0.132 0.868 25 H 0.395 0.605 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.812 5.939 0.020 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.033 4.033 3 C -0.218 4.218 4 C -0.080 4.080 5 C -0.223 4.223 6 C 0.135 3.865 7 N -0.342 5.342 8 C 0.128 3.872 9 C -0.578 4.578 10 H 0.081 0.919 11 C -0.139 4.139 12 N -0.527 5.527 13 Si 0.731 3.269 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.197 1.197 17 C -0.167 4.167 18 Cl -0.058 7.058 19 H 0.088 0.912 20 H 0.084 0.916 21 H 0.088 0.912 22 H 0.135 0.865 23 H 0.137 0.863 24 H 0.150 0.850 25 H 0.231 0.769 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.408 5.789 0.024 12.793 hybrid contribution 0.311 -1.363 -0.002 1.398 sum -11.097 4.426 0.022 11.947 Atomic orbital electron populations 1.20814 0.91280 1.02756 1.02309 1.19369 0.95610 0.91145 0.97132 1.20493 0.94005 0.96198 1.11119 1.20892 0.93915 0.97286 0.95930 1.20712 1.00461 0.90299 1.10856 1.17789 0.88840 0.88531 0.91361 1.45711 1.08558 1.03833 1.76074 1.19184 0.73185 0.98013 0.96819 1.21179 0.92132 0.91597 1.52878 0.91944 1.24915 0.96491 0.97902 0.94565 1.69936 1.02583 1.30900 1.49232 0.86401 0.78301 0.83885 0.78302 1.20399 1.20937 1.19706 1.20135 0.90195 0.86325 1.20040 1.98283 1.76494 1.33415 1.97606 0.91178 0.91618 0.91236 0.86480 0.86256 0.84977 0.76934 0.95881 0.95867 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.61 36.01 0.35 -1.03 15 2 C -0.03 -0.48 5.88 -104.62 -0.62 -1.09 15 3 C -0.20 -2.85 9.70 -39.55 -0.38 -3.23 15 4 C -0.06 -0.94 10.04 -39.60 -0.40 -1.34 15 5 C -0.20 -3.72 9.31 -39.39 -0.37 -4.08 15 6 C 0.25 4.90 6.65 -83.73 -0.56 4.34 15 7 N -0.72 -15.80 5.68 -59.77 -0.34 -16.14 15 8 C 0.25 6.32 4.67 -5.20 -0.02 6.30 15 9 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 15 10 H 0.06 1.66 7.60 -52.49 -0.40 1.26 15 11 C 0.06 1.77 5.46 -17.82 -0.10 1.68 15 12 N -0.89 -25.38 13.29 55.43 0.74 -24.64 15 13 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 15 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 15 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 17 C -0.13 -2.38 6.33 -39.32 -0.25 -2.63 15 18 Cl -0.09 -1.41 25.93 -51.86 -1.34 -2.75 15 19 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.06 0.66 8.08 -51.93 -0.42 0.24 15 21 H 0.07 0.84 6.90 -51.93 -0.36 0.48 15 22 H 0.12 1.37 8.06 -52.48 -0.42 0.94 15 23 H 0.12 1.51 8.06 -52.48 -0.42 1.08 15 24 H 0.13 2.57 6.74 -52.48 -0.35 2.22 15 25 H 0.40 8.44 7.00 -40.82 -0.29 8.16 15 26 H 0.02 0.63 7.96 -51.93 -0.41 0.21 15 27 H 0.02 0.63 7.94 -51.93 -0.41 0.22 15 28 H 0.27 7.15 8.31 -40.82 -0.34 6.82 15 LS Contribution 257.46 15.07 3.88 3.88 Total: -1.00 -27.97 257.46 -7.80 -35.77 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -3.04 Total: 4.10 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -2.66 Total: -16.12 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.40 Total: -40.79 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -1.34 Total: -2.75 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.97 -7.80 -35.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300906991.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.230 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds