Wall clock time and date at job start Mon Mar 30 2020 03:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38312 * 119.96609 * 2 1 4 4 C 1.38248 * 120.15467 * 180.02562 * 3 2 1 5 5 C 1.38165 * 120.09360 * 359.73958 * 4 3 2 6 6 C 1.38833 * 119.93603 * 0.53451 * 5 4 3 7 7 N 1.39755 * 120.07972 * 179.74619 * 6 5 4 8 8 C 1.46499 * 119.99867 * 359.72193 * 7 6 5 9 9 C 1.50697 * 109.47276 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99866 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99925 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00389 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99821 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46851 * 90.00139 * 13 11 9 15 15 H 1.48501 * 109.47218 * 209.99776 * 13 11 9 16 16 H 1.48503 * 109.47376 * 330.00226 * 13 11 9 17 17 C 1.38161 * 119.96949 * 180.02562 * 2 1 3 18 18 Cl 1.73601 * 120.04991 * 359.97438 * 17 2 1 19 19 H 1.09003 * 109.47273 * 269.98090 * 1 2 3 20 20 H 1.08998 * 109.47089 * 29.97795 * 1 2 3 21 21 H 1.08999 * 109.47443 * 149.97969 * 1 2 3 22 22 H 1.08003 * 119.92675 * 359.97438 * 3 2 1 23 23 H 1.08003 * 119.95681 * 179.97438 * 4 3 2 24 24 H 1.08006 * 120.03104 * 180.25455 * 5 4 3 25 25 H 0.96999 * 120.00148 * 179.72472 * 7 6 5 26 26 H 1.09004 * 109.47024 * 300.00438 * 8 7 6 27 27 H 1.09005 * 109.47136 * 60.00054 * 8 7 6 28 28 H 0.96998 * 120.00132 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1982 0.0000 4 6 3.5803 1.2028 -0.0005 5 6 4.2770 0.0097 0.0044 6 6 3.5875 -1.1953 -0.0014 7 7 4.2892 -2.4039 -0.0018 8 6 5.7542 -2.4003 -0.0023 9 6 6.2601 -3.8198 -0.0034 10 1 5.5603 -4.6425 -0.0032 11 6 7.6163 -4.0684 -0.0035 12 7 8.4684 -3.0667 -0.0022 13 14 8.2433 -5.8280 -0.0040 14 1 8.4094 -6.2938 -1.4043 15 1 9.5516 -5.8875 0.6959 16 1 7.2673 -6.7016 0.6957 17 6 2.1972 -1.1969 -0.0005 18 17 1.3297 -2.7006 -0.0005 19 1 -0.3634 -0.0003 1.0277 20 1 -0.3633 0.8902 -0.5135 21 1 -0.3634 -0.8898 -0.5141 22 1 1.6561 2.1325 -0.0004 23 1 4.1166 2.1403 -0.0010 24 1 5.3571 0.0144 0.0081 25 1 3.8063 -3.2451 -0.0018 26 1 6.1160 -1.8854 -0.8924 27 1 6.1166 -1.8857 0.8876 28 1 9.4225 -3.2416 -0.0019 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300906991.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:11 Heat of formation + Delta-G solvation = -14.555764 kcal Electronic energy + Delta-G solvation = -12808.802109 eV Core-core repulsion = 10462.956171 eV Total energy + Delta-G solvation = -2345.845938 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47118 -37.29282 -36.97719 -34.76270 -33.02105 -31.01281 -28.16588 -27.71836 -24.70394 -23.23820 -21.44560 -19.20848 -17.66326 -17.32138 -16.80151 -16.23246 -15.42394 -14.96780 -14.85124 -14.52319 -14.40977 -13.87833 -13.28940 -13.14940 -12.94506 -12.80503 -12.51932 -12.35704 -12.20192 -12.11085 -11.54528 -11.45992 -11.07799 -10.56406 -9.50919 -8.33614 -8.23019 -6.47448 0.36025 0.68945 1.33354 1.39105 1.40233 1.51586 2.31637 2.79189 2.86003 3.01645 3.88366 4.11713 4.44082 4.48933 4.54085 4.80341 4.86874 4.91767 5.02311 5.25274 5.25538 5.34770 5.48040 5.55991 5.68273 5.83177 6.03451 6.37595 6.66753 7.01563 7.25105 8.78051 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.041041 B = 0.006895 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.082805 B = 4059.949174 C = 4721.584519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.033 4.033 3 C -0.181 4.181 4 C -0.057 4.057 5 C -0.224 4.224 6 C 0.214 3.786 7 N -0.732 5.732 8 C 0.272 3.728 9 C -0.561 4.561 10 H 0.066 0.934 11 C 0.013 3.987 12 N -0.923 5.923 13 Si 0.976 3.024 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.265 1.265 17 C -0.144 4.144 18 Cl -0.079 7.079 19 H 0.084 0.916 20 H 0.093 0.907 21 H 0.066 0.934 22 H 0.159 0.841 23 H 0.150 0.850 24 H 0.109 0.891 25 H 0.395 0.605 26 H -0.004 1.004 27 H -0.004 1.004 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.580 6.544 0.023 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.035 4.035 3 C -0.201 4.201 4 C -0.076 4.076 5 C -0.247 4.247 6 C 0.106 3.894 7 N -0.357 5.357 8 C 0.150 3.850 9 C -0.599 4.599 10 H 0.084 0.916 11 C -0.188 4.188 12 N -0.561 5.561 13 Si 0.800 3.200 14 H -0.196 1.196 15 H -0.203 1.203 16 H -0.189 1.189 17 C -0.175 4.175 18 Cl -0.050 7.050 19 H 0.102 0.898 20 H 0.111 0.889 21 H 0.085 0.915 22 H 0.176 0.824 23 H 0.168 0.832 24 H 0.127 0.873 25 H 0.231 0.769 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.224 6.433 0.027 14.706 hybrid contribution 0.733 -1.391 -0.003 1.573 sum -12.491 5.042 0.024 13.470 Atomic orbital electron populations 1.20897 0.88466 1.04038 1.03546 1.19899 0.97687 0.90412 0.95476 1.21015 0.93561 0.97540 1.07965 1.21253 0.94802 0.97115 0.94390 1.20768 0.99724 0.91608 1.12603 1.18079 0.90023 0.87949 0.93357 1.45334 1.06899 1.04820 1.78691 1.18617 0.75522 0.96715 0.94182 1.21539 0.92795 0.92391 1.53125 0.91626 1.25872 0.96613 1.02455 0.93810 1.70058 1.03012 1.33250 1.49828 0.85283 0.77771 0.78341 0.78626 1.19589 1.20265 1.18899 1.20371 0.89518 0.87749 1.19892 1.98279 1.75975 1.33193 1.97589 0.89783 0.88857 0.91527 0.82352 0.83208 0.87324 0.76944 0.98642 0.98618 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.61 71.24 0.68 -1.58 15 2 C -0.03 -0.93 5.88 -19.86 -0.12 -1.05 15 3 C -0.18 -4.54 9.70 22.29 0.22 -4.33 15 4 C -0.06 -1.65 10.04 22.25 0.22 -1.43 15 5 C -0.22 -8.54 9.31 22.39 0.21 -8.33 15 6 C 0.21 8.71 6.65 38.21 0.25 8.97 15 7 N -0.73 -33.69 5.68 -343.02 -1.95 -35.64 15 8 C 0.27 14.68 4.67 85.63 0.40 15.08 15 9 C -0.56 -31.54 9.28 25.60 0.24 -31.31 15 10 H 0.07 3.55 7.60 -2.91 -0.02 3.53 15 11 C 0.01 0.71 5.46 84.65 0.46 1.17 15 12 N -0.92 -54.19 13.29 21.45 0.28 -53.90 15 13 Si 0.98 43.23 29.54 68.60 2.03 45.25 15 14 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 15 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 16 H -0.26 -11.31 7.11 99.48 0.71 -10.60 15 17 C -0.14 -4.97 6.33 22.44 0.14 -4.83 15 18 Cl -0.08 -2.51 25.93 -2.72 -0.07 -2.58 15 19 H 0.08 1.50 8.14 -2.39 -0.02 1.48 15 20 H 0.09 1.39 8.08 -2.39 -0.02 1.37 15 21 H 0.07 1.40 6.90 -2.39 -0.02 1.38 15 22 H 0.16 2.75 8.06 -2.91 -0.02 2.72 15 23 H 0.15 3.35 8.06 -2.91 -0.02 3.33 15 24 H 0.11 4.57 6.74 -2.91 -0.02 4.55 15 25 H 0.40 17.56 7.00 -92.71 -0.65 16.91 15 26 H 0.00 -0.24 7.96 -2.38 -0.02 -0.26 15 27 H 0.00 -0.23 7.94 -2.38 -0.02 -0.25 15 28 H 0.27 14.79 8.31 -92.71 -0.77 14.02 15 Total: -1.00 -61.93 257.46 3.52 -58.40 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.52 Total: 16.09 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 2.71 Total: -27.62 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -1.66 Total: -89.54 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.07 Total: -2.58 kcal Total: -61.93 3.52 -58.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300906991.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.848 kcal (2) G-P(sol) polarization free energy of solvation -61.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds