Wall clock time and date at job start Mon Mar 30 2020 02:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86804 * 119.99989 * 2 1 4 4 H 1.48501 * 109.47156 * 240.00213 * 3 2 1 5 5 H 1.48500 * 109.46896 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47043 * 119.99808 * 3 2 1 7 7 C 1.38803 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99834 * 179.97438 * 7 2 1 9 9 O 1.34858 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.34747 * 117.00010 * 180.02562 * 9 7 2 11 11 O 1.21529 * 120.00119 * 0.02562 * 10 9 7 12 12 C 1.47526 * 120.00020 * 180.02562 * 10 9 7 13 13 C 1.39828 * 120.14014 * 359.97438 * 12 10 9 14 14 C 1.37831 * 120.00869 * 180.02562 * 13 12 10 15 15 C 1.38401 * 120.29730 * 359.97438 * 14 13 12 16 16 C 1.38800 * 120.28443 * 359.97438 * 15 14 13 17 17 N 1.39877 * 120.00518 * 179.97438 * 16 15 14 18 18 C 1.38969 * 119.98473 * 0.26389 * 16 15 14 19 19 F 1.35102 * 120.14632 * 179.72978 * 18 16 15 20 20 H 0.96998 * 119.99671 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.99499 * 0.05218 * 13 12 10 22 22 H 1.08002 * 119.84900 * 179.97438 * 14 13 12 23 23 H 1.08005 * 119.85864 * 179.97438 * 15 14 13 24 24 H 0.97001 * 120.00505 * 359.97438 * 17 16 15 25 25 H 0.97005 * 119.99771 * 179.71950 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0082 -1.2021 -0.0005 8 1 3.0882 -1.2020 -0.0010 9 8 1.3340 -2.3700 -0.0005 10 6 2.0679 -3.5000 -0.0005 11 8 3.2815 -3.4364 -0.0001 12 6 1.3982 -4.8145 -0.0011 13 6 0.0020 -4.8912 -0.0011 14 6 -0.6209 -6.1207 -0.0011 15 6 0.1296 -7.2836 -0.0016 16 6 1.5162 -7.2218 -0.0027 17 7 2.2690 -8.4008 -0.0027 18 6 2.1565 -5.9884 0.0023 19 9 3.5060 -5.9244 0.0068 20 1 -0.4849 0.8401 -0.0004 21 1 -0.5884 -3.9868 -0.0015 22 1 -1.6994 -6.1769 -0.0007 23 1 -0.3658 -8.2433 -0.0012 24 1 1.8220 -9.2616 -0.0016 25 1 3.2380 -8.3574 -0.0076 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306261072.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:20 Heat of formation + Delta-G solvation = -97.589045 kcal Electronic energy + Delta-G solvation = -14828.357486 eV Core-core repulsion = 11914.741485 eV Total energy + Delta-G solvation = -2913.616001 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.28496 -39.27925 -38.24648 -35.14468 -34.33525 -32.18169 -30.46456 -28.43805 -25.64239 -23.60412 -21.88152 -20.38240 -17.77084 -17.60295 -17.00938 -16.63924 -15.56091 -15.29866 -14.85995 -14.46151 -14.24680 -14.23039 -14.22232 -12.68988 -12.52122 -12.46334 -11.73557 -11.50693 -11.25326 -11.14424 -10.63199 -10.47059 -10.30658 -9.85168 -9.01476 -8.61270 -8.50847 -7.40998 -6.46308 -4.08023 1.12837 1.66644 3.15482 3.18193 3.22322 3.49652 3.71363 3.97988 4.28021 4.43007 4.67137 5.13451 5.14504 5.26794 5.56889 5.71427 6.06390 6.25793 6.55630 6.72724 6.84099 7.03279 7.36866 7.47313 7.71923 7.92090 8.70639 9.02303 9.82736 10.71291 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.051060 B = 0.007233 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.246105 B = 3870.188540 C = 4408.589382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.042 3.958 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.373 4.373 8 H 0.097 0.903 9 O -0.202 6.202 10 C 0.428 3.572 11 O -0.542 6.542 12 C -0.078 4.078 13 C -0.100 4.100 14 C -0.096 4.096 15 C -0.163 4.163 16 C 0.169 3.831 17 N -0.878 5.878 18 C 0.068 3.932 19 F -0.124 7.124 20 H 0.272 0.728 21 H 0.147 0.853 22 H 0.131 0.869 23 H 0.128 0.872 24 H 0.399 0.601 25 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.809 -12.854 -0.013 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.163 4.163 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.449 4.449 8 H 0.115 0.885 9 O -0.109 6.109 10 C 0.276 3.724 11 O -0.440 6.440 12 C -0.081 4.081 13 C -0.120 4.120 14 C -0.115 4.115 15 C -0.186 4.186 16 C 0.065 3.935 17 N -0.420 5.420 18 C 0.043 3.957 19 F -0.102 7.102 20 H 0.082 0.918 21 H 0.165 0.835 22 H 0.149 0.851 23 H 0.146 0.854 24 H 0.228 0.772 25 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.661 -12.597 -0.009 12.706 hybrid contribution 0.839 0.426 -0.005 0.941 sum -0.822 -12.171 -0.013 12.199 Atomic orbital electron populations 1.69968 1.06050 1.28040 1.45398 1.25378 0.95867 0.98920 0.96148 0.85695 0.78644 0.79116 0.79475 1.19369 1.20288 1.19375 1.21287 0.92605 0.79738 1.51271 0.88490 1.83886 1.39029 1.13093 1.74846 1.20498 0.85888 0.85278 0.80716 1.90684 1.14787 1.87722 1.50767 1.19319 0.94031 0.90567 1.04195 1.21334 0.92492 0.99040 0.99177 1.20890 0.99969 0.91399 0.99194 1.20544 0.90484 0.99304 1.08256 1.17537 0.91577 0.85436 0.98906 1.42220 1.08781 1.04655 1.86335 1.17102 0.77386 0.91652 1.09536 1.91498 1.27843 1.96904 1.93960 0.91835 0.83478 0.85093 0.85426 0.77215 0.77110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.83 13.67 55.49 0.76 -24.07 15 2 C 0.04 1.17 5.50 -17.52 -0.10 1.08 15 3 Si 0.95 21.32 29.55 -169.99 -5.02 16.30 15 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 7 C -0.37 -11.20 9.65 30.94 0.30 -10.90 15 8 H 0.10 2.94 6.86 -52.49 -0.36 2.58 15 9 O -0.20 -5.92 8.99 -21.69 -0.19 -6.11 15 10 C 0.43 11.55 7.83 34.52 0.27 11.82 15 11 O -0.54 -15.83 14.58 -19.29 -0.28 -16.11 15 12 C -0.08 -1.70 5.88 -104.95 -0.62 -2.32 15 13 C -0.10 -1.83 9.61 -39.14 -0.38 -2.21 15 14 C -0.10 -1.34 10.02 -39.67 -0.40 -1.74 15 15 C -0.16 -2.09 9.88 -39.31 -0.39 -2.48 15 16 C 0.17 2.52 6.76 -83.71 -0.57 1.95 15 17 N -0.88 -9.71 9.10 32.44 0.30 -9.42 15 18 C 0.07 1.31 7.30 -38.75 -0.28 1.03 15 19 F -0.12 -2.60 14.92 2.25 0.03 -2.57 15 20 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 21 H 0.15 2.82 7.61 -52.49 -0.40 2.42 15 22 H 0.13 1.41 8.06 -52.49 -0.42 0.98 15 23 H 0.13 1.19 8.06 -52.48 -0.42 0.77 15 24 H 0.40 3.10 8.84 -40.82 -0.36 2.74 15 25 H 0.40 4.31 8.32 -40.82 -0.34 3.97 15 LS Contribution 240.59 15.07 3.63 3.63 Total: -1.00 -34.06 240.59 -4.38 -38.44 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -1.44 Total: 3.68 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.15 Total: -3.77 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 1.05 Total: -33.49 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.48 Total: -22.22 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.03 Total: -2.57 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -34.06 -4.38 -38.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306261072.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.148 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds