Wall clock time and date at job start Mon Mar 30 2020 02:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86804 * 119.99989 * 2 1 4 4 H 1.48501 * 109.47156 * 240.00213 * 3 2 1 5 5 H 1.48500 * 109.46896 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47043 * 119.99808 * 3 2 1 7 7 C 1.38803 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99834 * 179.97438 * 7 2 1 9 9 O 1.34858 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.34747 * 117.00010 * 180.02562 * 9 7 2 11 11 O 1.21529 * 120.00119 * 0.02562 * 10 9 7 12 12 C 1.47526 * 120.00020 * 180.02562 * 10 9 7 13 13 C 1.39828 * 120.14014 * 359.97438 * 12 10 9 14 14 C 1.37831 * 120.00869 * 180.02562 * 13 12 10 15 15 C 1.38401 * 120.29730 * 359.97438 * 14 13 12 16 16 C 1.38800 * 120.28443 * 359.97438 * 15 14 13 17 17 N 1.39877 * 120.00518 * 179.97438 * 16 15 14 18 18 C 1.38969 * 119.98473 * 0.26389 * 16 15 14 19 19 F 1.35102 * 120.14632 * 179.72978 * 18 16 15 20 20 H 0.96998 * 119.99671 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.99499 * 0.05218 * 13 12 10 22 22 H 1.08002 * 119.84900 * 179.97438 * 14 13 12 23 23 H 1.08005 * 119.85864 * 179.97438 * 15 14 13 24 24 H 0.97001 * 120.00505 * 359.97438 * 17 16 15 25 25 H 0.97005 * 119.99771 * 179.71950 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0082 -1.2021 -0.0005 8 1 3.0882 -1.2020 -0.0010 9 8 1.3340 -2.3700 -0.0005 10 6 2.0679 -3.5000 -0.0005 11 8 3.2815 -3.4364 -0.0001 12 6 1.3982 -4.8145 -0.0011 13 6 0.0020 -4.8912 -0.0011 14 6 -0.6209 -6.1207 -0.0011 15 6 0.1296 -7.2836 -0.0016 16 6 1.5162 -7.2218 -0.0027 17 7 2.2690 -8.4008 -0.0027 18 6 2.1565 -5.9884 0.0023 19 9 3.5060 -5.9244 0.0068 20 1 -0.4849 0.8401 -0.0004 21 1 -0.5884 -3.9868 -0.0015 22 1 -1.6994 -6.1769 -0.0007 23 1 -0.3658 -8.2433 -0.0012 24 1 1.8220 -9.2616 -0.0016 25 1 3.2380 -8.3574 -0.0076 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306261072.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:20 Heat of formation + Delta-G solvation = -122.546050 kcal Electronic energy + Delta-G solvation = -14829.439703 eV Core-core repulsion = 11914.741485 eV Total energy + Delta-G solvation = -2914.698218 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.81292 -41.16540 -39.77529 -37.28443 -35.56642 -34.34820 -31.87111 -29.68853 -27.71495 -25.25999 -23.18158 -22.16210 -19.92641 -19.18286 -18.45788 -18.00815 -17.27466 -16.98094 -16.28653 -16.27852 -16.23068 -15.87108 -15.47373 -14.54991 -13.97795 -13.74767 -13.66956 -13.22796 -12.93638 -12.51986 -12.45342 -12.17083 -12.07403 -11.72526 -11.12693 -10.74000 -9.90453 -8.59803 -8.56684 -6.37038 -0.33133 0.37630 1.32333 1.37468 1.48586 1.77119 2.05312 2.52296 2.70572 2.93223 2.99007 3.23289 3.92358 3.98813 4.27415 4.41193 4.80124 4.96990 5.01789 5.12709 5.34888 5.45777 5.74851 5.77218 6.36800 6.54656 6.83802 6.91760 7.66399 8.60435 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.051060 B = 0.007233 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.246105 B = 3870.188540 C = 4408.589382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.001 3.999 3 Si 1.020 2.980 4 H -0.262 1.262 5 H -0.254 1.254 6 H -0.262 1.262 7 C -0.425 4.425 8 H 0.079 0.921 9 O -0.225 6.225 10 C 0.425 3.575 11 O -0.577 6.577 12 C -0.120 4.120 13 C -0.112 4.112 14 C -0.074 4.074 15 C -0.132 4.132 16 C 0.184 3.816 17 N -0.859 5.859 18 C 0.035 3.965 19 F -0.143 7.143 20 H 0.283 0.717 21 H 0.127 0.873 22 H 0.177 0.823 23 H 0.185 0.815 24 H 0.421 0.579 25 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 -14.987 -0.015 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.201 4.201 3 Si 0.838 3.162 4 H -0.187 1.187 5 H -0.177 1.177 6 H -0.187 1.187 7 C -0.500 4.500 8 H 0.097 0.903 9 O -0.133 6.133 10 C 0.274 3.726 11 O -0.477 6.477 12 C -0.122 4.122 13 C -0.133 4.133 14 C -0.092 4.092 15 C -0.155 4.155 16 C 0.077 3.923 17 N -0.402 5.402 18 C 0.010 3.990 19 F -0.122 7.122 20 H 0.092 0.908 21 H 0.145 0.855 22 H 0.194 0.806 23 H 0.202 0.798 24 H 0.253 0.747 25 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -3.201 -14.803 -0.011 15.145 hybrid contribution 1.242 0.793 -0.004 1.473 sum -1.959 -14.010 -0.015 14.146 Atomic orbital electron populations 1.70038 1.07559 1.29811 1.45462 1.26582 0.96997 1.02152 0.94325 0.84666 0.77688 0.74050 0.79780 1.18659 1.17696 1.18671 1.21476 0.92322 0.81105 1.55133 0.90292 1.83909 1.39572 1.13717 1.76069 1.21654 0.85908 0.86675 0.78320 1.90618 1.16459 1.88503 1.52123 1.19213 0.95664 0.88330 1.09015 1.21290 0.90867 1.00643 1.00460 1.21339 1.02186 0.89555 0.96155 1.21188 0.89219 1.01216 1.03876 1.17666 0.92661 0.84763 0.97161 1.42231 1.09023 1.04369 1.84547 1.17436 0.76659 0.92868 1.11993 1.91433 1.29331 1.97091 1.94356 0.90778 0.85547 0.80598 0.79791 0.74680 0.76808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.02 13.67 21.63 0.30 -52.72 15 2 C 0.00 0.05 5.50 84.89 0.47 0.52 15 3 Si 1.02 44.36 29.55 68.60 2.03 46.39 15 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 15 5 H -0.25 -9.94 7.11 99.48 0.71 -9.23 15 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 15 7 C -0.42 -27.15 9.65 67.96 0.66 -26.49 15 8 H 0.08 5.15 6.86 -2.91 -0.02 5.13 15 9 O -0.22 -14.17 8.99 11.16 0.10 -14.07 15 10 C 0.42 24.60 7.83 70.27 0.55 25.15 15 11 O -0.58 -36.30 14.58 19.74 0.29 -36.01 15 12 C -0.12 -5.40 5.88 -20.08 -0.12 -5.52 15 13 C -0.11 -4.10 9.61 22.56 0.22 -3.88 15 14 C -0.07 -1.77 10.02 22.21 0.22 -1.55 15 15 C -0.13 -2.66 9.88 22.44 0.22 -2.44 15 16 C 0.18 4.88 6.76 38.17 0.26 5.14 15 17 N -0.86 -15.63 9.10 -51.27 -0.47 -16.09 15 18 C 0.03 1.36 7.30 22.81 0.17 1.53 15 19 F -0.14 -6.27 14.92 44.97 0.67 -5.60 15 20 H 0.28 15.09 8.31 -92.71 -0.77 14.32 15 21 H 0.13 5.09 7.61 -2.91 -0.02 5.06 15 22 H 0.18 2.70 8.06 -2.91 -0.02 2.68 15 23 H 0.18 1.81 8.06 -2.91 -0.02 1.78 15 24 H 0.42 4.24 8.84 -92.71 -0.82 3.42 15 25 H 0.40 7.59 8.32 -92.70 -0.77 6.82 15 Total: -1.00 -81.57 240.59 5.23 -76.34 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -0.33 Total: 9.32 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 2.64 Total: -7.55 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: -0.17 Total: -68.82 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: 0.39 Total: -50.08 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.67 Total: -5.60 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -81.57 5.23 -76.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306261072.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.206 kcal (2) G-P(sol) polarization free energy of solvation -81.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds