Wall clock time and date at job start Mon Mar 30 2020 02:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99505 * 2 1 4 4 H 1.48500 * 109.46953 * 239.99744 * 3 2 1 5 5 H 1.48496 * 109.47140 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47295 * 120.00027 * 3 2 1 7 7 C 1.37870 * 120.00431 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99966 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.41954 * 299.14396 * 9 7 2 11 11 C 1.54475 * 110.37238 * 176.83223 * 9 7 2 12 12 C 1.54512 * 104.06386 * 217.19203 * 11 9 7 13 13 C 1.54474 * 104.06131 * 0.02562 * 12 11 9 14 14 H 1.09006 * 110.37557 * 265.14427 * 13 12 11 15 15 C 1.50705 * 110.37366 * 142.81134 * 13 12 11 16 16 C 1.33634 * 126.03965 * 102.88202 * 15 13 12 17 17 N 1.31783 * 114.49961 * 179.78934 * 16 15 13 18 18 C 1.29020 * 117.12682 * 0.51605 * 17 16 15 19 19 S 1.70983 * 110.16686 * 359.71853 * 18 17 16 20 20 O 1.44426 * 110.36924 * 61.45432 * 9 7 2 21 21 H 0.97000 * 120.00303 * 0.02562 * 1 2 3 22 22 H 1.09002 * 110.51057 * 335.83551 * 11 9 7 23 23 H 1.08994 * 110.51200 * 98.41178 * 11 9 7 24 24 H 1.08999 * 110.51561 * 118.64366 * 12 11 9 25 25 H 1.09000 * 110.51089 * 241.21647 * 12 11 9 26 26 H 1.08009 * 122.74675 * 359.97307 * 16 15 13 27 27 H 1.08000 * 124.91965 * 179.74792 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6299 -2.5796 0.8924 11 6 2.2346 -3.6877 -0.0788 12 6 1.5116 -4.7137 -0.9800 13 6 0.1772 -4.0233 -1.3390 14 1 -0.6093 -4.3372 -0.6526 15 6 -0.2101 -4.3374 -2.7611 16 6 -1.1395 -5.2166 -3.1470 17 7 -1.2969 -5.3080 -4.4522 18 6 -0.5449 -4.5623 -5.1891 19 16 0.4879 -3.6156 -4.2091 20 8 0.4399 -2.6113 -1.1891 21 1 -0.4850 0.8400 -0.0004 22 1 3.1748 -3.3758 -0.5335 23 1 2.4107 -4.1046 0.9127 24 1 2.0944 -4.9090 -1.8802 25 1 1.3306 -5.6401 -0.4349 26 1 -1.7166 -5.8021 -2.4464 27 1 -0.5652 -4.5391 -6.2687 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306389180.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:00 Heat of formation + Delta-G solvation = -2.503233 kcal Electronic energy + Delta-G solvation = -13259.759378 eV Core-core repulsion = 10916.479783 eV Total energy + Delta-G solvation = -2343.279595 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.35888 -38.02536 -32.83964 -31.23782 -30.77371 -27.80802 -25.43513 -23.75083 -21.35880 -20.29819 -19.60600 -17.66957 -16.76940 -15.52807 -15.02498 -14.38264 -14.19274 -13.89312 -13.60344 -13.47855 -12.73566 -12.23084 -11.72537 -11.16107 -11.05569 -10.90070 -10.65508 -10.45491 -10.12543 -9.87293 -9.35955 -9.19453 -8.84539 -8.67790 -8.55719 -8.20069 -6.06535 -4.19949 1.05346 1.74832 2.20665 3.12435 3.29800 3.34733 3.36640 4.38128 4.58735 4.89147 5.28020 5.42008 5.48464 5.49797 5.65167 5.82023 6.10972 6.24752 6.38728 6.43317 6.56468 6.68369 6.73039 7.40937 7.83147 7.97183 8.11775 8.39874 8.89632 9.50991 11.01144 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.037332 B = 0.008414 C = 0.007638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.846121 B = 3327.036177 C = 3665.155175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.893 3.107 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.532 4.532 8 H 0.065 0.935 9 C 0.205 3.795 10 H 0.028 0.972 11 C -0.146 4.146 12 C -0.143 4.143 13 C 0.132 3.868 14 H 0.073 0.927 15 C -0.182 4.182 16 C 0.013 3.987 17 N -0.474 5.474 18 C -0.021 4.021 19 S 0.172 5.828 20 O -0.340 6.340 21 H 0.263 0.737 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.171 0.829 27 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.096 -8.082 -5.598 9.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.129 4.129 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.083 0.917 9 C 0.150 3.850 10 H 0.046 0.954 11 C -0.184 4.184 12 C -0.182 4.182 13 C 0.071 3.929 14 H 0.091 0.909 15 C -0.304 4.304 16 C -0.138 4.138 17 N -0.188 5.188 18 C -0.318 4.318 19 S 0.425 5.575 20 O -0.260 6.260 21 H 0.073 0.927 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.188 0.812 27 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.223 -7.409 -6.259 9.775 hybrid contribution -0.120 0.212 0.607 0.654 sum 1.103 -7.197 -5.651 9.217 Atomic orbital electron populations 1.70018 1.06068 1.26880 1.46838 1.25085 0.94793 0.99390 0.93582 0.86658 0.79707 0.82853 0.78776 1.19979 1.21131 1.20040 1.20974 0.92650 0.89630 1.53687 0.91703 1.20571 0.86849 0.92768 0.84812 0.95397 1.23063 1.00713 0.96597 0.98057 1.22982 0.96387 0.98711 1.00106 1.21093 0.96256 0.88210 0.87349 0.90948 1.26159 1.02183 1.01938 1.00097 1.21610 0.99655 1.01317 0.91250 1.66299 1.24482 1.23143 1.04847 1.28313 0.99331 0.99345 1.04792 1.84339 1.37175 1.39368 0.96660 1.89590 1.72329 1.16054 1.48004 0.92746 0.91519 0.92368 0.91861 0.91674 0.81162 0.79080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.40 12.94 55.43 0.72 -24.68 15 2 C 0.08 2.18 5.42 -17.82 -0.10 2.08 15 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 7 C -0.53 -14.67 8.78 -34.44 -0.30 -14.97 15 8 H 0.06 1.72 7.59 -52.49 -0.40 1.33 15 9 C 0.21 5.18 3.11 -27.11 -0.08 5.09 15 10 H 0.03 0.76 8.14 -51.93 -0.42 0.33 15 11 C -0.15 -2.95 6.61 -25.16 -0.17 -3.12 15 12 C -0.14 -2.53 6.62 -25.16 -0.17 -2.70 15 13 C 0.13 2.63 3.76 -27.11 -0.10 2.53 15 14 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 15 C -0.18 -3.30 5.49 -35.92 -0.20 -3.50 15 16 C 0.01 0.21 11.25 -19.19 -0.22 -0.01 15 17 N -0.47 -7.82 10.54 -15.75 -0.17 -7.99 15 18 C -0.02 -0.31 12.23 51.58 0.63 0.32 15 19 S 0.17 2.85 23.09 -107.50 -2.48 0.37 15 20 O -0.34 -8.64 10.43 -35.23 -0.37 -9.01 15 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 22 H 0.07 1.35 7.72 -51.93 -0.40 0.95 15 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 24 H 0.06 1.07 7.86 -51.93 -0.41 0.66 15 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 26 H 0.17 2.40 8.06 -52.48 -0.42 1.98 15 27 H 0.19 2.01 8.06 -52.49 -0.42 1.59 15 LS Contribution 251.29 15.07 3.79 3.79 Total: -1.00 -30.86 251.29 -7.11 -37.97 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -2.88 Total: -2.28 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -0.70 Total: -14.27 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.55 Total: -32.66 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.37 Total: -9.01 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.48 Total: 0.37 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.86 -7.11 -37.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306389180.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.466 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds