Wall clock time and date at job start Mon Mar 30 2020 02:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99505 * 2 1 4 4 H 1.48500 * 109.46953 * 239.99744 * 3 2 1 5 5 H 1.48496 * 109.47140 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47295 * 120.00027 * 3 2 1 7 7 C 1.37870 * 120.00431 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99966 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.41954 * 299.14396 * 9 7 2 11 11 C 1.54475 * 110.37238 * 176.83223 * 9 7 2 12 12 C 1.54512 * 104.06386 * 217.19203 * 11 9 7 13 13 C 1.54474 * 104.06131 * 0.02562 * 12 11 9 14 14 H 1.09006 * 110.37557 * 265.14427 * 13 12 11 15 15 C 1.50705 * 110.37366 * 142.81134 * 13 12 11 16 16 C 1.33634 * 126.03965 * 102.88202 * 15 13 12 17 17 N 1.31783 * 114.49961 * 179.78934 * 16 15 13 18 18 C 1.29020 * 117.12682 * 0.51605 * 17 16 15 19 19 S 1.70983 * 110.16686 * 359.71853 * 18 17 16 20 20 O 1.44426 * 110.36924 * 61.45432 * 9 7 2 21 21 H 0.97000 * 120.00303 * 0.02562 * 1 2 3 22 22 H 1.09002 * 110.51057 * 335.83551 * 11 9 7 23 23 H 1.08994 * 110.51200 * 98.41178 * 11 9 7 24 24 H 1.08999 * 110.51561 * 118.64366 * 12 11 9 25 25 H 1.09000 * 110.51089 * 241.21647 * 12 11 9 26 26 H 1.08009 * 122.74675 * 359.97307 * 16 15 13 27 27 H 1.08000 * 124.91965 * 179.74792 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6299 -2.5796 0.8924 11 6 2.2346 -3.6877 -0.0788 12 6 1.5116 -4.7137 -0.9800 13 6 0.1772 -4.0233 -1.3390 14 1 -0.6093 -4.3372 -0.6526 15 6 -0.2101 -4.3374 -2.7611 16 6 -1.1395 -5.2166 -3.1470 17 7 -1.2969 -5.3080 -4.4522 18 6 -0.5449 -4.5623 -5.1891 19 16 0.4879 -3.6156 -4.2091 20 8 0.4399 -2.6113 -1.1891 21 1 -0.4850 0.8400 -0.0004 22 1 3.1748 -3.3758 -0.5335 23 1 2.4107 -4.1046 0.9127 24 1 2.0944 -4.9090 -1.8802 25 1 1.3306 -5.6401 -0.4349 26 1 -1.7166 -5.8021 -2.4464 27 1 -0.5652 -4.5391 -6.2687 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306389180.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:59 Heat of formation + Delta-G solvation = -22.986791 kcal Electronic energy + Delta-G solvation = -13260.647611 eV Core-core repulsion = 10916.479783 eV Total energy + Delta-G solvation = -2344.167828 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.69611 -39.66490 -34.84296 -32.85457 -32.39427 -29.46903 -27.01072 -25.35552 -23.00663 -21.89587 -20.96371 -19.08424 -18.67313 -17.04730 -16.79231 -16.16520 -15.81480 -15.25468 -15.08201 -14.76826 -14.33291 -14.03918 -13.53092 -12.81888 -12.60712 -12.45219 -12.35444 -12.15648 -12.03623 -11.45932 -11.09646 -10.73449 -10.60392 -10.27761 -10.03976 -9.81983 -8.17029 -6.37450 -0.20839 0.48166 0.94868 1.41346 1.44014 1.51593 1.86477 2.40399 3.03470 3.41934 3.64217 3.86311 3.96899 4.16906 4.40664 4.42887 4.57458 4.68958 4.83622 4.98669 5.08493 5.18272 5.22348 5.49782 5.72517 6.12694 6.47813 6.72009 6.87221 7.38200 8.91124 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.037332 B = 0.008414 C = 0.007638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.846121 B = 3327.036177 C = 3665.155175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.024 3.976 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.552 4.552 8 H 0.068 0.932 9 C 0.196 3.804 10 H -0.002 1.002 11 C -0.138 4.138 12 C -0.130 4.130 13 C 0.127 3.873 14 H 0.075 0.925 15 C -0.215 4.215 16 C 0.024 3.976 17 N -0.494 5.494 18 C 0.010 3.990 19 S 0.146 5.854 20 O -0.375 6.375 21 H 0.262 0.738 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.191 0.809 27 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 -8.951 -6.631 11.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.589 4.589 8 H 0.086 0.914 9 C 0.140 3.860 10 H 0.015 0.985 11 C -0.176 4.176 12 C -0.169 4.169 13 C 0.066 3.934 14 H 0.093 0.907 15 C -0.337 4.337 16 C -0.126 4.126 17 N -0.207 5.207 18 C -0.286 4.286 19 S 0.398 5.602 20 O -0.295 6.295 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.208 0.792 27 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.837 -8.294 -7.282 11.189 hybrid contribution -0.365 0.403 0.856 1.015 sum 1.471 -7.891 -6.425 10.282 Atomic orbital electron populations 1.70163 1.07744 1.27582 1.48501 1.25952 0.95584 1.03128 0.93188 0.85593 0.78419 0.78286 0.79240 1.19409 1.20947 1.18742 1.21429 0.93131 0.91159 1.53208 0.91405 1.20474 0.87451 0.94087 0.83946 0.98452 1.22934 0.99364 0.95443 0.99865 1.22923 0.94785 0.98947 1.00197 1.21233 0.97512 0.85718 0.88913 0.90749 1.25983 1.04185 1.03918 0.99565 1.21938 0.98520 1.00396 0.91792 1.66400 1.25346 1.24167 1.04831 1.29020 0.96763 0.96625 1.06242 1.84417 1.38310 1.40397 0.97035 1.89489 1.72662 1.19837 1.47523 0.92926 0.91895 0.90383 0.91092 0.88393 0.79223 0.74926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.63 12.94 21.44 0.28 -54.35 15 2 C 0.02 1.34 5.42 84.65 0.46 1.80 15 3 Si 0.96 43.73 29.54 68.60 2.03 45.75 15 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 15 7 C -0.55 -30.94 8.78 25.60 0.22 -30.71 15 8 H 0.07 3.63 7.59 -2.91 -0.02 3.61 15 9 C 0.20 10.09 3.11 30.35 0.09 10.19 15 10 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 15 11 C -0.14 -5.47 6.61 31.61 0.21 -5.27 15 12 C -0.13 -4.38 6.62 31.61 0.21 -4.17 15 13 C 0.13 5.00 3.76 30.35 0.11 5.11 15 14 H 0.07 2.82 8.14 -2.38 -0.02 2.80 15 15 C -0.21 -7.58 5.49 24.64 0.14 -7.45 15 16 C 0.02 0.76 11.25 83.66 0.94 1.70 15 17 N -0.49 -15.00 10.54 -203.74 -2.15 -17.15 15 18 C 0.01 0.27 12.23 130.66 1.60 1.87 15 19 S 0.15 4.65 23.09 -56.49 -1.30 3.35 15 20 O -0.38 -19.45 10.43 -148.98 -1.55 -21.00 15 21 H 0.26 15.02 8.31 -92.71 -0.77 14.25 15 22 H 0.06 2.51 7.72 -2.39 -0.02 2.49 15 23 H 0.08 2.72 8.14 -2.39 -0.02 2.71 15 24 H 0.07 2.27 7.86 -2.39 -0.02 2.25 15 25 H 0.10 2.64 8.14 -2.39 -0.02 2.62 15 26 H 0.19 4.95 8.06 -2.91 -0.02 4.93 15 27 H 0.23 3.90 8.06 -2.91 -0.02 3.88 15 Total: -1.00 -67.23 251.29 2.45 -64.79 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.17 Total: 5.53 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 3.98 Total: -26.92 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -1.87 Total: -71.50 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -1.55 Total: -21.00 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -1.30 Total: 3.35 kcal Total: -67.23 2.45 -64.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306389180.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.799 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds