Wall clock time and date at job start Mon Mar 30 2020 02:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99829 * 2 1 4 4 H 1.48494 * 109.47108 * 270.00456 * 3 2 1 5 5 H 1.48510 * 109.46915 * 30.00337 * 3 2 1 6 6 H 1.48495 * 109.47198 * 150.00071 * 3 2 1 7 7 C 1.37874 * 120.00636 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99630 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00379 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.89632 * 300.93463 * 9 7 2 11 11 C 1.54378 * 109.83128 * 179.97438 * 9 7 2 12 12 C 1.55307 * 102.25419 * 219.12813 * 11 9 7 13 13 C 1.54941 * 100.94052 * 34.13841 * 12 11 9 14 14 H 1.09002 * 110.31244 * 82.46869 * 13 12 11 15 15 C 1.50695 * 110.30824 * 204.54006 * 13 12 11 16 16 C 1.33639 * 126.03826 * 263.32313 * 15 13 12 17 17 N 1.31781 * 114.50290 * 179.78705 * 16 15 13 18 18 C 1.29026 * 117.12470 * 0.52466 * 17 16 15 19 19 S 1.70976 * 110.16409 * 359.71105 * 18 17 16 20 20 O 1.43470 * 109.82223 * 61.82986 * 9 7 2 21 21 H 0.97003 * 120.00324 * 359.97438 * 1 2 3 22 22 H 1.09009 * 110.84604 * 100.94070 * 11 9 7 23 23 H 1.08997 * 111.02628 * 337.40685 * 11 9 7 24 24 H 1.08998 * 111.12841 * 276.21293 * 12 11 9 25 25 H 1.09006 * 111.15507 * 152.06814 * 12 11 9 26 26 H 1.08002 * 122.74785 * 359.97438 * 16 15 13 27 27 H 1.07996 * 124.92157 * 179.75522 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 1 3.8821 -0.6668 -0.8803 11 6 4.0353 -2.6461 -0.0010 12 6 5.2550 -2.5565 0.9563 13 6 4.7570 -1.4944 1.9685 14 1 4.1227 -1.9591 2.7233 15 6 5.9272 -0.8055 2.6219 16 6 6.4602 -1.1156 3.8076 17 7 7.4845 -0.3649 4.1595 18 6 7.8388 0.5678 3.3414 19 16 6.8297 0.5560 1.9613 20 8 3.9985 -0.5569 1.1887 21 1 -0.4851 0.8400 0.0004 22 1 4.3484 -2.9456 -1.0013 23 1 3.2846 -3.3326 0.3903 24 1 6.1438 -2.2103 0.4288 25 1 5.4401 -3.5115 1.4481 26 1 6.0841 -1.9177 4.4253 27 1 8.6550 1.2560 3.5045 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306389182.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:04 Heat of formation + Delta-G solvation = 2.314332 kcal Electronic energy + Delta-G solvation = -13365.090826 eV Core-core repulsion = 11022.020136 eV Total energy + Delta-G solvation = -2343.070689 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.52729 -38.34037 -32.79711 -31.57499 -31.03103 -28.20981 -25.58040 -23.76221 -21.41428 -20.24901 -19.93264 -17.86068 -16.82330 -16.16623 -15.31273 -14.57510 -14.16439 -14.07256 -13.73578 -13.11762 -12.69418 -12.48563 -12.26487 -11.24885 -11.20275 -11.14280 -10.81216 -10.36035 -10.11318 -9.87035 -9.53744 -9.39143 -9.00607 -8.73880 -8.58700 -8.25147 -6.12727 -4.21619 0.90200 1.58469 2.03649 2.98739 3.36893 3.43006 3.67447 4.44016 4.51731 4.67699 5.12972 5.20702 5.32350 5.36923 5.54954 5.66555 5.95116 6.03720 6.20820 6.28550 6.30873 6.44542 6.61018 7.17720 7.59047 7.83535 8.09550 8.40971 8.88239 9.52102 10.97898 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035577 B = 0.009929 C = 0.008576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.828418 B = 2819.356048 C = 3264.117898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.085 3.915 3 Si 0.867 3.133 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.222 1.222 7 C -0.535 4.535 8 H 0.076 0.924 9 C 0.168 3.832 10 H 0.040 0.960 11 C -0.132 4.132 12 C -0.145 4.145 13 C 0.146 3.854 14 H 0.084 0.916 15 C -0.190 4.190 16 C 0.016 3.984 17 N -0.472 5.472 18 C -0.014 4.014 19 S 0.154 5.846 20 O -0.372 6.372 21 H 0.265 0.735 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.173 0.827 27 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.096 -0.917 3.289 14.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.119 4.119 3 Si 0.694 3.306 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.146 1.146 7 C -0.572 4.572 8 H 0.094 0.906 9 C 0.113 3.887 10 H 0.058 0.942 11 C -0.170 4.170 12 C -0.184 4.184 13 C 0.085 3.915 14 H 0.102 0.898 15 C -0.312 4.312 16 C -0.135 4.135 17 N -0.186 5.186 18 C -0.311 4.311 19 S 0.407 5.593 20 O -0.293 6.293 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.190 0.810 27 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 14.199 -0.037 2.956 14.504 hybrid contribution -0.039 0.058 0.549 0.554 sum 14.160 0.021 3.505 14.588 Atomic orbital electron populations 1.69929 1.06718 1.27441 1.48870 1.25028 0.94600 0.99815 0.92474 0.86998 0.82852 0.82474 0.78288 1.21026 1.21719 1.14557 1.21279 0.88481 0.94738 1.52673 0.90594 1.20796 0.95033 0.88691 0.84206 0.94243 1.23031 0.95738 0.99671 0.98574 1.23283 0.99035 0.98643 0.97419 1.21062 0.87375 0.88886 0.94180 0.89821 1.26455 1.03726 1.01427 0.99579 1.21628 0.94771 1.02042 0.95057 1.66310 1.14486 1.05511 1.32245 1.28312 1.05257 1.01852 0.95691 1.84263 1.23471 1.29251 1.22359 1.88954 1.69129 1.35140 1.36036 0.92543 0.91538 0.90626 0.91365 0.90815 0.80953 0.78970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.96 55.43 0.77 -26.52 15 2 C 0.09 2.47 5.47 -17.82 -0.10 2.37 15 3 Si 0.87 21.80 27.01 -169.99 -4.59 17.21 15 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 15 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 15 6 H -0.22 -5.43 5.40 56.52 0.31 -5.12 15 7 C -0.53 -14.87 9.33 -34.44 -0.32 -15.19 15 8 H 0.08 2.26 7.77 -52.48 -0.41 1.85 15 9 C 0.17 3.87 2.83 -27.16 -0.08 3.79 15 10 H 0.04 0.92 7.54 -51.93 -0.39 0.53 15 11 C -0.13 -2.46 6.52 -24.79 -0.16 -2.62 15 12 C -0.15 -2.31 6.56 -24.48 -0.16 -2.47 15 13 C 0.15 2.65 3.91 -26.86 -0.10 2.55 15 14 H 0.08 1.50 8.14 -51.93 -0.42 1.08 15 15 C -0.19 -3.14 5.64 -35.92 -0.20 -3.35 15 16 C 0.02 0.24 11.25 -19.18 -0.22 0.02 15 17 N -0.47 -7.23 10.54 -15.75 -0.17 -7.39 15 18 C -0.01 -0.19 12.23 51.58 0.63 0.44 15 19 S 0.15 2.32 22.97 -107.50 -2.47 -0.15 15 20 O -0.37 -8.43 7.51 -35.23 -0.26 -8.69 15 21 H 0.27 7.62 8.31 -40.82 -0.34 7.28 15 22 H 0.07 1.11 8.14 -51.92 -0.42 0.68 15 23 H 0.08 1.43 7.66 -51.93 -0.40 1.04 15 24 H 0.07 1.03 8.05 -51.93 -0.42 0.61 15 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 26 H 0.17 2.23 8.06 -52.49 -0.42 1.81 15 27 H 0.19 1.81 8.06 -52.49 -0.42 1.38 15 LS Contribution 245.20 15.07 3.70 3.70 Total: -1.00 -31.47 245.20 -6.69 -38.16 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -2.96 Total: -1.86 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -0.71 Total: -14.45 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.61 Total: -33.92 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.26 Total: -8.69 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.59 Total: 17.21 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.47 Total: -0.15 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.47 -6.69 -38.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306389182.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.473 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds