Wall clock time and date at job start Mon Mar 30 2020 02:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99829 * 2 1 4 4 H 1.48494 * 109.47108 * 270.00456 * 3 2 1 5 5 H 1.48510 * 109.46915 * 30.00337 * 3 2 1 6 6 H 1.48495 * 109.47198 * 150.00071 * 3 2 1 7 7 C 1.37874 * 120.00636 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99630 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00379 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.89632 * 300.93463 * 9 7 2 11 11 C 1.54378 * 109.83128 * 179.97438 * 9 7 2 12 12 C 1.55307 * 102.25419 * 219.12813 * 11 9 7 13 13 C 1.54941 * 100.94052 * 34.13841 * 12 11 9 14 14 H 1.09002 * 110.31244 * 82.46869 * 13 12 11 15 15 C 1.50695 * 110.30824 * 204.54006 * 13 12 11 16 16 C 1.33639 * 126.03826 * 263.32313 * 15 13 12 17 17 N 1.31781 * 114.50290 * 179.78705 * 16 15 13 18 18 C 1.29026 * 117.12470 * 0.52466 * 17 16 15 19 19 S 1.70976 * 110.16409 * 359.71105 * 18 17 16 20 20 O 1.43470 * 109.82223 * 61.82986 * 9 7 2 21 21 H 0.97003 * 120.00324 * 359.97438 * 1 2 3 22 22 H 1.09009 * 110.84604 * 100.94070 * 11 9 7 23 23 H 1.08997 * 111.02628 * 337.40685 * 11 9 7 24 24 H 1.08998 * 111.12841 * 276.21293 * 12 11 9 25 25 H 1.09006 * 111.15507 * 152.06814 * 12 11 9 26 26 H 1.08002 * 122.74785 * 359.97438 * 16 15 13 27 27 H 1.07996 * 124.92157 * 179.75522 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 1 3.8821 -0.6668 -0.8803 11 6 4.0353 -2.6461 -0.0010 12 6 5.2550 -2.5565 0.9563 13 6 4.7570 -1.4944 1.9685 14 1 4.1227 -1.9591 2.7233 15 6 5.9272 -0.8055 2.6219 16 6 6.4602 -1.1156 3.8076 17 7 7.4845 -0.3649 4.1595 18 6 7.8388 0.5678 3.3414 19 16 6.8297 0.5560 1.9613 20 8 3.9985 -0.5569 1.1887 21 1 -0.4851 0.8400 0.0004 22 1 4.3484 -2.9456 -1.0013 23 1 3.2846 -3.3326 0.3903 24 1 6.1438 -2.2103 0.4288 25 1 5.4401 -3.5115 1.4481 26 1 6.0841 -1.9177 4.4253 27 1 8.6550 1.2560 3.5045 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306389182.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:04 Heat of formation + Delta-G solvation = -19.094791 kcal Electronic energy + Delta-G solvation = -13366.019195 eV Core-core repulsion = 11022.020136 eV Total energy + Delta-G solvation = -2343.999058 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.75997 -39.83638 -34.84200 -33.08226 -32.57589 -29.78490 -27.02961 -25.28597 -22.81915 -21.98239 -21.07838 -19.18668 -18.78821 -17.55826 -17.00730 -16.02398 -15.80796 -15.32463 -14.80906 -14.78625 -14.53183 -14.02706 -13.92120 -12.90197 -12.64039 -12.54778 -12.47776 -12.15763 -11.68502 -11.63820 -11.33316 -10.75509 -10.64301 -10.32285 -10.02454 -9.78334 -8.34398 -6.46461 -0.22170 0.45866 0.91359 1.36462 1.39140 1.68116 1.86360 2.42487 2.90944 3.34144 3.54246 3.80013 3.82609 4.19486 4.40235 4.41622 4.48004 4.59225 4.81824 4.93132 5.04661 5.14858 5.20688 5.48775 5.56386 6.15180 6.43965 6.70309 6.72413 7.31427 8.79921 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035577 B = 0.009929 C = 0.008576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.828418 B = 2819.356048 C = 3264.117898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.028 3.972 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.210 1.210 7 C -0.539 4.539 8 H 0.040 0.960 9 C 0.167 3.833 10 H 0.041 0.959 11 C -0.130 4.130 12 C -0.128 4.128 13 C 0.139 3.861 14 H 0.079 0.921 15 C -0.219 4.219 16 C 0.025 3.975 17 N -0.495 5.495 18 C 0.013 3.987 19 S 0.141 5.859 20 O -0.393 6.393 21 H 0.266 0.734 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.190 0.810 27 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.014 -0.543 3.858 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.172 4.172 3 Si 0.754 3.246 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.133 1.133 7 C -0.576 4.576 8 H 0.058 0.942 9 C 0.111 3.889 10 H 0.058 0.942 11 C -0.167 4.167 12 C -0.166 4.166 13 C 0.079 3.921 14 H 0.097 0.903 15 C -0.341 4.341 16 C -0.125 4.125 17 N -0.209 5.209 18 C -0.284 4.284 19 S 0.394 5.606 20 O -0.314 6.314 21 H 0.075 0.925 22 H 0.106 0.894 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.121 0.879 26 H 0.207 0.793 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 17.134 0.317 3.522 17.495 hybrid contribution -0.897 -0.111 0.442 1.006 sum 16.238 0.207 3.965 16.716 Atomic orbital electron populations 1.70064 1.08442 1.28266 1.51422 1.25896 0.95258 1.03519 0.92498 0.86025 0.81808 0.78026 0.78718 1.19984 1.22263 1.13275 1.21651 0.91425 0.93194 1.51352 0.94154 1.20652 0.91979 0.91712 0.84562 0.94173 1.22957 0.96671 0.96445 1.00674 1.23224 0.97868 0.99410 0.96102 1.21183 0.87746 0.89004 0.94196 0.90320 1.26198 1.04290 1.03030 1.00565 1.21918 0.94199 1.01937 0.94484 1.66403 1.15041 1.06530 1.32881 1.28996 1.04660 1.00876 0.93867 1.84295 1.23902 1.28949 1.23450 1.88824 1.70004 1.36483 1.36076 0.92536 0.89430 0.91730 0.90071 0.87852 0.79331 0.75073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.52 13.96 21.45 0.30 -59.22 15 2 C 0.03 1.62 5.47 84.65 0.46 2.09 15 3 Si 0.93 45.53 27.01 68.60 1.85 47.38 15 4 H -0.27 -12.85 7.11 99.48 0.71 -12.14 15 5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 15 6 H -0.21 -9.79 5.40 99.48 0.54 -9.25 15 7 C -0.54 -30.66 9.33 25.60 0.24 -30.42 15 8 H 0.04 2.50 7.77 -2.91 -0.02 2.48 15 9 C 0.17 7.58 2.83 30.31 0.09 7.67 15 10 H 0.04 1.83 7.54 -2.39 -0.02 1.81 15 11 C -0.13 -4.62 6.52 31.85 0.21 -4.41 15 12 C -0.13 -3.71 6.56 32.05 0.21 -3.50 15 13 C 0.14 4.81 3.91 30.51 0.12 4.92 15 14 H 0.08 2.74 8.14 -2.39 -0.02 2.73 15 15 C -0.22 -6.72 5.64 24.64 0.14 -6.58 15 16 C 0.03 0.70 11.25 83.66 0.94 1.64 15 17 N -0.49 -13.50 10.54 -203.75 -2.15 -15.64 15 18 C 0.01 0.29 12.23 130.65 1.60 1.89 15 19 S 0.14 3.85 22.97 -56.49 -1.30 2.55 15 20 O -0.39 -17.35 7.51 -148.98 -1.12 -18.47 15 21 H 0.27 15.79 8.31 -92.71 -0.77 15.02 15 22 H 0.09 2.73 8.14 -2.38 -0.02 2.71 15 23 H 0.06 2.42 7.66 -2.39 -0.02 2.40 15 24 H 0.08 2.17 8.05 -2.39 -0.02 2.15 15 25 H 0.10 2.40 8.14 -2.38 -0.02 2.38 15 26 H 0.19 4.38 8.06 -2.91 -0.02 4.35 15 27 H 0.23 3.19 8.06 -2.91 -0.02 3.16 15 Total: -1.00 -68.76 245.20 2.59 -66.17 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 1.00 Total: 3.93 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 4.00 Total: -26.69 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -1.85 Total: -74.86 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -1.12 Total: -18.47 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.85 Total: 47.38 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.30 Total: 2.55 kcal Total: -68.76 2.59 -66.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306389182.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.073 kcal (2) G-P(sol) polarization free energy of solvation -68.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds