Wall clock time and date at job start Mon Mar 30 2020 02:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32772 * 124.71199 * 2 1 4 4 C 1.44430 * 113.08215 * 179.74060 * 3 2 1 5 5 C 1.47189 * 123.45848 * 180.19299 * 4 3 2 6 6 O 1.21628 * 120.00305 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99665 * 180.02562 * 5 4 3 8 8 C 1.46504 * 120.00083 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47236 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99876 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99938 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00003 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99937 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.46967 * 89.99738 * 13 11 9 15 15 H 1.48500 * 109.46988 * 209.99956 * 13 11 9 16 16 H 1.48494 * 109.47200 * 329.99919 * 13 11 9 17 17 C 1.36004 * 113.07645 * 0.23479 * 4 3 2 18 18 S 1.70445 * 110.82134 * 359.97438 * 17 4 3 19 19 H 1.09006 * 109.46552 * 89.99708 * 1 2 3 20 20 H 1.08987 * 109.47519 * 209.99950 * 1 2 3 21 21 H 1.08999 * 109.47110 * 330.00719 * 1 2 3 22 22 H 1.08002 * 123.46203 * 0.02562 * 3 2 1 23 23 H 0.97005 * 120.00162 * 0.02562 * 7 5 4 24 24 H 1.08996 * 109.47326 * 300.00540 * 8 7 5 25 25 H 1.09003 * 109.46265 * 60.00506 * 8 7 5 26 26 H 0.97005 * 120.00076 * 179.97438 * 12 11 9 27 27 H 1.08006 * 124.59273 * 180.02562 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8003 0.0060 5 6 4.7201 1.8395 0.0114 6 8 4.4071 3.0148 0.0113 7 7 6.0214 1.4885 0.0163 8 6 7.0590 2.5228 0.0210 9 6 8.4178 1.8712 0.0267 10 1 8.5002 0.7943 0.0263 11 6 9.5557 2.6498 0.0323 12 7 10.7415 2.0811 0.0367 13 14 9.4129 4.5124 0.0337 14 1 9.3691 5.0044 1.4341 15 1 10.5870 5.0993 -0.6608 16 1 8.1692 4.9140 -0.6712 17 6 3.9476 -0.5327 0.0053 18 16 2.5064 -1.4427 -0.0018 19 1 -0.3633 0.0001 -1.0278 20 1 -0.3634 -0.8899 0.5137 21 1 -0.3633 0.8900 0.5137 22 1 1.8615 2.0940 0.0004 23 1 6.2710 0.5512 0.0160 24 1 6.9571 3.1438 -0.8689 25 1 6.9499 3.1426 0.9111 26 1 11.5421 2.6289 0.0403 27 1 4.9407 -0.9573 0.0096 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306523262.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:06 Heat of formation + Delta-G solvation = -40.167537 kcal Electronic energy + Delta-G solvation = -12605.770357 eV Core-core repulsion = 10260.857515 eV Total energy + Delta-G solvation = -2344.912841 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.83023 -38.06992 -36.24158 -34.52485 -33.03055 -30.07790 -27.53389 -25.93758 -23.74890 -21.78669 -20.44023 -19.11172 -18.35515 -17.78386 -16.77126 -16.31112 -16.10337 -15.17601 -14.84196 -14.69532 -14.44169 -14.16042 -13.93373 -13.35870 -13.05238 -12.95438 -12.90324 -12.70913 -11.96874 -11.91369 -11.70011 -10.97474 -10.94639 -10.08939 -9.75184 -9.30993 -8.42810 -6.50458 -0.23622 0.58024 0.91368 0.97759 1.31573 1.33449 1.46569 2.26043 2.34697 2.39253 2.92482 3.77977 4.00660 4.21117 4.36857 4.51357 4.74449 4.79954 4.93536 4.96950 5.02834 5.19064 5.23500 5.39345 5.42201 6.04912 6.48680 6.74282 7.10815 7.28919 8.71771 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.058560 B = 0.005771 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.025018 B = 4851.094648 C = 5308.669824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.201 4.201 3 C -0.118 4.118 4 C -0.174 4.174 5 C 0.559 3.441 6 O -0.596 6.596 7 N -0.699 5.699 8 C 0.232 3.768 9 C -0.549 4.549 10 H 0.060 0.940 11 C 0.028 3.972 12 N -0.929 5.929 13 Si 0.938 3.062 14 H -0.264 1.264 15 H -0.271 1.271 16 H -0.262 1.262 17 C -0.217 4.217 18 S 0.252 5.748 19 H 0.088 0.912 20 H 0.088 0.912 21 H 0.082 0.918 22 H 0.142 0.858 23 H 0.407 0.593 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.273 0.727 27 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.578 -8.291 -0.085 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.318 4.318 3 C -0.147 4.147 4 C -0.192 4.192 5 C 0.347 3.653 6 O -0.479 6.479 7 N -0.347 5.347 8 C 0.108 3.892 9 C -0.587 4.587 10 H 0.078 0.922 11 C -0.173 4.173 12 N -0.567 5.567 13 Si 0.761 3.239 14 H -0.189 1.189 15 H -0.195 1.195 16 H -0.186 1.186 17 C -0.356 4.356 18 S 0.518 5.482 19 H 0.106 0.894 20 H 0.107 0.893 21 H 0.101 0.899 22 H 0.159 0.841 23 H 0.243 0.757 24 H 0.033 0.967 25 H 0.032 0.968 26 H 0.083 0.917 27 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -19.866 -8.986 -0.089 21.804 hybrid contribution 1.330 2.125 0.015 2.507 sum -18.536 -6.862 -0.074 19.765 Atomic orbital electron populations 1.20483 0.84963 1.04484 1.04077 1.24809 1.02155 0.95834 1.08970 1.21005 0.90036 1.00354 1.03274 1.20190 0.94172 0.92618 1.12196 1.18287 0.82843 0.88258 0.75960 1.90688 1.83022 1.20772 1.53458 1.45906 1.05001 1.11260 1.72576 1.19159 0.85896 0.88231 0.95891 1.21246 0.89542 0.94856 1.53055 0.92207 1.25588 0.94596 1.03641 0.93428 1.69973 0.98393 1.37950 1.50410 0.85853 0.78597 0.79894 0.79552 1.18881 1.19543 1.18585 1.25959 1.06972 0.97143 1.05490 1.82592 0.91078 1.06376 1.68158 0.89351 0.89271 0.89922 0.84061 0.75708 0.96727 0.96836 0.91728 0.80010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.35 71.24 0.74 -0.29 15 2 C -0.20 -4.08 6.44 24.51 0.16 -3.92 15 3 C -0.12 -3.32 9.95 22.67 0.23 -3.09 15 4 C -0.17 -5.63 5.98 -19.87 -0.12 -5.75 15 5 C 0.56 23.66 7.79 86.59 0.67 24.33 15 6 O -0.60 -29.57 16.80 -4.12 -0.07 -29.64 15 7 N -0.70 -30.24 5.52 -470.33 -2.60 -32.83 15 8 C 0.23 11.86 4.50 85.63 0.38 12.24 15 9 C -0.55 -30.96 9.83 25.60 0.25 -30.71 15 10 H 0.06 3.52 7.84 -2.91 -0.02 3.49 15 11 C 0.03 1.61 5.47 84.65 0.46 2.07 15 12 N -0.93 -55.79 13.96 21.45 0.30 -55.50 15 13 Si 0.94 44.67 27.47 68.60 1.88 46.55 15 14 H -0.26 -12.15 7.11 99.48 0.71 -11.45 15 15 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 16 H -0.26 -12.44 6.54 99.48 0.65 -11.79 15 17 C -0.22 -5.44 10.38 67.30 0.70 -4.74 15 18 S 0.25 4.47 23.00 -56.49 -1.30 3.17 15 19 H 0.09 0.92 8.14 -2.38 -0.02 0.90 15 20 H 0.09 0.78 8.14 -2.39 -0.02 0.76 15 21 H 0.08 0.99 8.14 -2.39 -0.02 0.97 15 22 H 0.14 4.09 8.06 -2.91 -0.02 4.07 15 23 H 0.41 15.35 6.82 -92.70 -0.63 14.71 15 24 H 0.01 0.79 7.20 -2.39 -0.02 0.77 15 25 H 0.01 0.72 7.57 -2.39 -0.02 0.71 15 26 H 0.27 15.26 8.31 -92.70 -0.77 14.49 15 27 H 0.18 4.01 7.01 -2.91 -0.02 3.99 15 Total: -1.00 -70.24 255.41 2.20 -68.04 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.50 Total: 10.06 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 3.47 Total: -9.86 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -2.30 Total: -88.33 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.07 Total: -29.64 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.30 Total: 3.17 kcal Total: -70.24 2.20 -68.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306523262.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.871 kcal (2) G-P(sol) polarization free energy of solvation -70.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds