Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36273 * 120.13473 * 2 1 4 4 C 1.39255 * 120.26313 * 180.02562 * 3 2 1 5 5 F 1.35103 * 119.73519 * 180.02562 * 4 3 2 6 6 C 1.39289 * 120.52573 * 359.97438 * 4 3 2 7 7 N 1.48016 * 119.86688 * 180.02562 * 6 4 3 8 8 O 1.31703 * 119.99684 * 179.97438 * 7 6 4 9 9 O 1.31699 * 120.00060 * 359.97438 * 7 6 4 10 10 C 1.36241 * 120.25975 * 359.97438 * 6 4 3 11 11 C 1.41426 * 120.13768 * 179.97438 * 2 1 3 12 12 C 1.40034 * 120.25263 * 0.02562 * 11 2 1 13 13 H 1.07999 * 120.00048 * 26.40916 * 12 11 2 14 14 C 1.46579 * 120.00037 * 206.40424 * 12 11 2 15 15 N 1.29485 * 120.00197 * 11.57333 * 14 12 11 16 16 Si 1.86802 * 120.00146 * 191.57959 * 14 12 11 17 17 H 1.48494 * 109.47459 * 94.98745 * 16 14 12 18 18 H 1.48499 * 109.47235 * 214.99093 * 16 14 12 19 19 H 1.48504 * 109.47032 * 334.98630 * 16 14 12 20 20 H 1.08999 * 109.46368 * 90.00737 * 1 2 3 21 21 H 1.08998 * 109.47108 * 210.00387 * 1 2 3 22 22 H 1.08994 * 109.47144 * 330.00719 * 1 2 3 23 23 H 1.08003 * 119.87069 * 0.03319 * 3 2 1 24 24 H 1.08006 * 120.13180 * 179.74781 * 10 6 4 25 25 H 0.96996 * 120.00344 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1785 0.0000 4 6 3.5837 1.1817 -0.0005 5 9 4.2512 2.3563 0.0000 6 6 4.2939 -0.0166 -0.0005 7 7 5.7739 0.0038 -0.0005 8 8 6.4480 -1.1277 0.0000 9 8 6.4167 1.1532 -0.0011 10 6 3.6316 -1.2072 0.0005 11 6 2.2171 -1.2231 0.0005 12 6 1.5252 -2.4406 0.0006 13 1 0.5303 -2.4962 -0.4158 14 6 2.1514 -3.6394 0.5656 15 7 3.2386 -3.5354 1.2611 16 14 1.3810 -5.3174 0.2821 17 1 2.0233 -5.9655 -0.8893 18 1 1.5797 -6.1631 1.4865 19 1 -0.0727 -5.1575 0.0240 20 1 -0.3632 -0.0001 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.6512 2.1139 0.0005 24 1 4.1843 -2.1351 -0.0036 25 1 3.6528 -4.3286 1.6353 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306539779.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = -21.019641 kcal Electronic energy + Delta-G solvation = -15074.023273 eV Core-core repulsion = 12163.727570 eV Total energy + Delta-G solvation = -2910.295702 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.79773 -38.77848 -37.39517 -34.15409 -33.46738 -32.22753 -30.16814 -27.72698 -25.64260 -24.02208 -21.85331 -20.35521 -18.45524 -17.29631 -16.89765 -15.72827 -15.68256 -15.28265 -14.88916 -14.28420 -13.65997 -13.29284 -12.90733 -12.71155 -12.30800 -11.80443 -11.59080 -11.32994 -11.08157 -10.74797 -10.65035 -10.45559 -10.35004 -9.97047 -9.84539 -9.77995 -8.40459 -7.99323 -7.43312 -4.89292 0.33449 2.13283 2.15733 2.33044 2.74840 2.77617 2.81222 3.46937 3.87899 4.80023 5.10808 5.45080 5.82896 5.97862 6.12467 6.16813 6.26855 6.32325 6.44690 6.59674 6.87542 6.96599 7.01859 7.37236 7.45021 7.73672 7.83408 8.04935 8.20949 9.44973 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.028257 B = 0.010700 C = 0.007922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.670677 B = 2616.293434 C = 3533.660571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.154 4.154 3 C -0.098 4.098 4 C -0.018 4.018 5 F -0.141 7.141 6 C 0.006 3.994 7 N -0.004 5.004 8 O -0.201 6.201 9 O -0.198 6.198 10 C -0.095 4.095 11 C 0.094 3.906 12 C -0.427 4.427 13 H 0.101 0.899 14 C 0.065 3.935 15 N -0.742 5.742 16 Si 0.929 3.071 17 H -0.260 1.260 18 H -0.270 1.270 19 H -0.253 1.253 20 H 0.055 0.945 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.123 0.877 24 H 0.158 0.842 25 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.921 -1.110 -0.988 6.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C -0.118 4.118 4 C -0.040 4.040 5 F -0.120 7.120 6 C -0.081 4.081 7 N 0.470 4.530 8 O -0.391 6.391 9 O -0.389 6.389 10 C -0.116 4.116 11 C 0.090 3.910 12 C -0.452 4.452 13 H 0.119 0.881 14 C -0.164 4.164 15 N -0.362 5.362 16 Si 0.751 3.249 17 H -0.185 1.185 18 H -0.195 1.195 19 H -0.177 1.177 20 H 0.073 0.927 21 H 0.089 0.911 22 H 0.068 0.932 23 H 0.141 0.859 24 H 0.175 0.825 25 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.312 -1.210 -0.827 6.480 hybrid contribution 0.531 -0.463 0.048 0.707 sum -5.781 -1.673 -0.779 6.069 Atomic orbital electron populations 1.20488 0.91531 1.01800 1.00840 1.19673 0.95682 0.91822 1.08455 1.20161 0.90132 0.98742 1.02756 1.16888 0.89707 0.78645 1.18744 1.91431 1.80651 1.44974 1.94945 1.20211 0.74467 0.96577 1.16877 1.50642 1.05528 1.01977 0.94887 1.96196 1.69209 1.16807 1.56846 1.96212 1.72210 1.13911 1.56551 1.21286 0.95218 0.95371 0.99702 1.17313 0.89438 0.92846 0.91414 1.20888 1.02013 0.90763 1.31520 0.88090 1.27700 0.93902 1.02807 0.91966 1.68998 1.14650 1.34434 1.18128 0.85921 0.80887 0.78513 0.79530 1.18474 1.19479 1.17651 0.92679 0.91116 0.93180 0.85898 0.82504 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.40 36.01 0.34 -1.14 15 2 C -0.15 -3.18 5.92 -104.12 -0.62 -3.79 15 3 C -0.10 -2.02 9.60 -39.91 -0.38 -2.41 15 4 C -0.02 -0.42 7.30 -38.81 -0.28 -0.71 15 5 F -0.14 -3.33 15.37 2.25 0.03 -3.29 15 6 C 0.01 0.16 6.85 -80.28 -0.55 -0.39 15 7 N 0.00 -0.09 4.98 33.80 0.17 0.07 15 8 O -0.20 -5.16 19.11 -31.57 -0.60 -5.77 15 9 O -0.20 -5.10 18.06 -31.57 -0.57 -5.67 15 10 C -0.10 -2.33 8.22 -39.08 -0.32 -2.65 15 11 C 0.09 2.15 5.61 -106.78 -0.60 1.55 15 12 C -0.43 -9.23 8.38 -35.55 -0.30 -9.53 15 13 H 0.10 2.00 6.96 -52.49 -0.37 1.63 15 14 C 0.06 1.35 5.41 -15.18 -0.08 1.27 15 15 N -0.74 -16.48 10.87 55.99 0.61 -15.87 15 16 Si 0.93 15.34 29.66 -169.99 -5.04 10.30 15 17 H -0.26 -4.32 7.11 56.52 0.40 -3.92 15 18 H -0.27 -4.41 7.11 56.52 0.40 -4.01 15 19 H -0.25 -4.06 7.11 56.52 0.40 -3.66 15 20 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 21 H 0.07 1.16 6.81 -51.93 -0.35 0.81 15 22 H 0.05 0.72 8.08 -51.93 -0.42 0.30 15 23 H 0.12 2.14 8.06 -52.48 -0.42 1.72 15 24 H 0.16 3.99 5.60 -52.48 -0.29 3.69 15 25 H 0.30 5.99 8.27 -40.82 -0.34 5.65 15 LS Contribution 237.98 15.07 3.59 3.59 Total: -1.00 -25.80 237.98 -6.02 -31.83 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -1.41 Total: 2.61 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -2.79 Total: -17.80 kcal Atomic # 7 Polarization: -16.58 SS G_CDS: 0.78 Total: -15.80 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -1.17 Total: -11.43 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.03 Total: -3.29 kcal Atomic # 14 Polarization: 15.34 SS G_CDS: -5.04 Total: 10.30 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -25.80 -6.02 -31.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306539779.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.806 kcal (2) G-P(sol) polarization free energy of solvation -25.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds