Wall clock time and date at job start Mon Mar 30 2020 02:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36273 * 120.13473 * 2 1 4 4 C 1.39255 * 120.26313 * 180.02562 * 3 2 1 5 5 F 1.35103 * 119.73519 * 180.02562 * 4 3 2 6 6 C 1.39289 * 120.52573 * 359.97438 * 4 3 2 7 7 N 1.48016 * 119.86688 * 180.02562 * 6 4 3 8 8 O 1.31703 * 119.99684 * 179.97438 * 7 6 4 9 9 O 1.31699 * 120.00060 * 359.97438 * 7 6 4 10 10 C 1.36241 * 120.25975 * 359.97438 * 6 4 3 11 11 C 1.41426 * 120.13768 * 179.97438 * 2 1 3 12 12 C 1.40034 * 120.25263 * 0.02562 * 11 2 1 13 13 H 1.07999 * 120.00048 * 26.40916 * 12 11 2 14 14 C 1.46579 * 120.00037 * 206.40424 * 12 11 2 15 15 N 1.29485 * 120.00197 * 11.57333 * 14 12 11 16 16 Si 1.86802 * 120.00146 * 191.57959 * 14 12 11 17 17 H 1.48494 * 109.47459 * 94.98745 * 16 14 12 18 18 H 1.48499 * 109.47235 * 214.99093 * 16 14 12 19 19 H 1.48504 * 109.47032 * 334.98630 * 16 14 12 20 20 H 1.08999 * 109.46368 * 90.00737 * 1 2 3 21 21 H 1.08998 * 109.47108 * 210.00387 * 1 2 3 22 22 H 1.08994 * 109.47144 * 330.00719 * 1 2 3 23 23 H 1.08003 * 119.87069 * 0.03319 * 3 2 1 24 24 H 1.08006 * 120.13180 * 179.74781 * 10 6 4 25 25 H 0.96996 * 120.00344 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1785 0.0000 4 6 3.5837 1.1817 -0.0005 5 9 4.2512 2.3563 0.0000 6 6 4.2939 -0.0166 -0.0005 7 7 5.7739 0.0038 -0.0005 8 8 6.4480 -1.1277 0.0000 9 8 6.4167 1.1532 -0.0011 10 6 3.6316 -1.2072 0.0005 11 6 2.2171 -1.2231 0.0005 12 6 1.5252 -2.4406 0.0006 13 1 0.5303 -2.4962 -0.4158 14 6 2.1514 -3.6394 0.5656 15 7 3.2386 -3.5354 1.2611 16 14 1.3810 -5.3174 0.2821 17 1 2.0233 -5.9655 -0.8893 18 1 1.5797 -6.1631 1.4865 19 1 -0.0727 -5.1575 0.0240 20 1 -0.3632 -0.0001 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.6512 2.1139 0.0005 24 1 4.1843 -2.1351 -0.0036 25 1 3.6528 -4.3286 1.6353 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306539779.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:18 Heat of formation + Delta-G solvation = -34.002717 kcal Electronic energy + Delta-G solvation = -15074.586261 eV Core-core repulsion = 12163.727570 eV Total energy + Delta-G solvation = -2910.858691 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.61909 -40.60691 -39.25042 -35.80752 -35.47748 -33.92139 -31.86826 -29.37579 -27.40220 -25.75225 -23.57158 -22.10124 -20.23240 -19.24776 -18.71114 -17.42709 -17.38370 -17.23088 -16.50323 -16.15675 -15.24442 -14.89938 -14.40258 -14.29499 -13.85418 -13.27944 -12.98304 -12.92361 -12.61070 -12.50400 -12.39970 -12.24428 -11.89969 -11.83849 -11.78526 -11.33562 -10.09127 -9.74234 -9.02043 -6.59683 -1.64489 0.23292 0.41038 0.57526 1.39253 1.44136 1.57115 2.08537 2.28369 3.11338 3.33876 3.81764 4.21617 4.25730 4.37059 4.59275 4.77619 4.90831 4.99558 5.06968 5.17122 5.28849 5.43744 5.69933 5.72036 5.83117 6.15808 6.36975 6.52105 7.88758 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.028257 B = 0.010700 C = 0.007922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.670677 B = 2616.293434 C = 3533.660571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.141 4.141 3 C -0.094 4.094 4 C -0.038 4.038 5 F -0.145 7.145 6 C -0.011 4.011 7 N -0.003 5.003 8 O -0.223 6.223 9 O -0.208 6.208 10 C -0.125 4.125 11 C 0.069 3.931 12 C -0.433 4.433 13 H 0.123 0.877 14 C 0.028 3.972 15 N -0.776 5.776 16 Si 1.001 2.999 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.237 1.237 20 H 0.077 0.923 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.161 0.839 24 H 0.139 0.861 25 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.846 -1.523 -1.195 9.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C -0.113 4.113 4 C -0.060 4.060 5 F -0.125 7.125 6 C -0.099 4.099 7 N 0.465 4.535 8 O -0.408 6.408 9 O -0.398 6.398 10 C -0.146 4.146 11 C 0.065 3.935 12 C -0.457 4.457 13 H 0.141 0.859 14 C -0.198 4.198 15 N -0.397 5.397 16 Si 0.819 3.181 17 H -0.187 1.187 18 H -0.192 1.192 19 H -0.160 1.160 20 H 0.096 0.904 21 H 0.090 0.910 22 H 0.095 0.905 23 H 0.179 0.821 24 H 0.156 0.844 25 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.207 -1.618 -1.031 9.405 hybrid contribution 1.326 -0.340 0.136 1.375 sum -7.881 -1.958 -0.895 8.170 Atomic orbital electron populations 1.20597 0.88004 1.03267 1.02628 1.20243 0.98096 0.90776 1.05161 1.20553 0.88830 1.00479 1.01436 1.17268 0.90874 0.77953 1.19940 1.91407 1.81002 1.45015 1.95026 1.20583 0.73593 0.97678 1.18064 1.50880 1.06271 1.01725 0.94598 1.96173 1.69632 1.16952 1.58066 1.96178 1.72618 1.14019 1.57005 1.21201 0.96188 0.94482 1.02777 1.17722 0.88934 0.94673 0.92162 1.21367 1.02827 0.90897 1.30612 0.85928 1.28691 0.93908 1.06260 0.90954 1.69065 1.15907 1.35954 1.18756 0.84869 0.80602 0.73470 0.79136 1.18712 1.19193 1.15972 0.90441 0.90969 0.90461 0.82130 0.84378 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.51 9.40 71.24 0.67 -1.84 15 2 C -0.14 -5.43 5.92 -19.54 -0.12 -5.54 15 3 C -0.09 -3.64 9.60 22.06 0.21 -3.42 15 4 C -0.04 -1.79 7.30 22.77 0.17 -1.62 15 5 F -0.15 -6.84 15.37 44.97 0.69 -6.15 15 6 C -0.01 -0.57 6.85 36.16 0.25 -0.32 15 7 N 0.00 -0.18 4.98 -46.97 -0.23 -0.41 15 8 O -0.22 -11.98 19.11 3.51 0.07 -11.92 15 9 O -0.21 -11.04 18.06 3.52 0.06 -10.97 15 10 C -0.13 -6.30 8.22 22.60 0.19 -6.11 15 11 C 0.07 3.11 5.61 -21.27 -0.12 2.99 15 12 C -0.43 -17.99 8.38 24.88 0.21 -17.78 15 13 H 0.12 4.45 6.96 -2.91 -0.02 4.43 15 14 C 0.03 1.11 5.41 87.22 0.47 1.59 15 15 N -0.78 -34.73 10.87 23.22 0.25 -34.47 15 16 Si 1.00 29.70 29.66 68.60 2.03 31.73 15 17 H -0.26 -7.86 7.11 99.48 0.71 -7.15 15 18 H -0.27 -7.78 7.11 99.48 0.71 -7.07 15 19 H -0.24 -6.41 7.11 99.48 0.71 -5.71 15 20 H 0.08 1.92 8.14 -2.39 -0.02 1.90 15 21 H 0.07 2.06 6.81 -2.39 -0.02 2.04 15 22 H 0.08 1.80 8.08 -2.39 -0.02 1.79 15 23 H 0.16 4.94 8.06 -2.91 -0.02 4.92 15 24 H 0.14 7.35 5.60 -2.91 -0.02 7.34 15 25 H 0.31 12.38 8.27 -92.71 -0.77 11.61 15 Total: -1.00 -56.21 237.98 6.04 -50.17 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.24 Total: 14.09 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 1.93 Total: -32.06 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.02 Total: -34.89 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.13 Total: -22.89 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 0.69 Total: -6.15 kcal Atomic # 14 Polarization: 29.70 SS G_CDS: 2.03 Total: 31.73 kcal Total: -56.21 6.04 -50.17 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306539779.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.163 kcal (2) G-P(sol) polarization free energy of solvation -56.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds