Wall clock time and date at job start Mon Mar 30 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 119.99686 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99841 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99850 * 3 2 1 6 6 H 1.48496 * 109.47209 * 149.99888 * 3 2 1 7 7 C 1.38781 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00006 * 179.97438 * 7 2 1 9 9 O 1.34874 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.34809 * 116.99924 * 179.97438 * 9 7 2 11 11 O 1.21571 * 119.99880 * 0.02562 * 10 9 7 12 12 C 1.47092 * 119.99761 * 180.02562 * 10 9 7 13 13 C 1.40532 * 120.24128 * 89.72480 * 12 10 9 14 14 N 1.38853 * 120.16393 * 359.97438 * 13 12 10 15 15 C 1.38822 * 119.66507 * 179.69699 * 13 12 10 16 16 C 1.38090 * 120.14695 * 0.60055 * 15 13 12 17 17 C 1.38453 * 120.48204 * 359.67392 * 16 15 13 18 18 C 1.38114 * 120.33732 * 0.02562 * 17 16 15 19 19 F 1.35093 * 120.07954 * 179.97438 * 18 17 16 20 20 H 0.96991 * 120.00483 * 0.02562 * 1 2 3 21 21 H 0.97004 * 120.00107 * 359.97438 * 14 13 12 22 22 H 0.97001 * 120.00600 * 179.97438 * 14 13 12 23 23 H 1.08005 * 119.92516 * 180.30059 * 15 13 12 24 24 H 1.07991 * 119.76022 * 179.69742 * 16 15 13 25 25 H 1.08005 * 119.83639 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4403 0.7000 7 6 2.0084 -1.2019 0.0005 8 1 3.0884 -1.2018 0.0001 9 8 1.3340 -2.3699 0.0005 10 6 2.0683 -3.5005 0.0005 11 8 3.2823 -3.4368 0.0010 12 6 1.4005 -4.8111 0.0000 13 6 1.0745 -5.4388 -1.2144 14 7 1.3806 -4.8246 -2.4215 15 6 0.4500 -6.6786 -1.2010 16 6 0.1398 -7.2859 -0.0002 17 6 0.4530 -6.6704 1.1997 18 6 1.0799 -5.4397 1.2097 19 9 1.3827 -4.8436 2.3836 20 1 -0.4850 0.8399 -0.0004 21 1 1.8203 -3.9600 -2.4280 22 1 1.1548 -5.2601 -3.2583 23 1 0.2019 -7.1670 -2.1318 24 1 -0.3504 -8.2481 0.0029 25 1 0.2060 -7.1550 2.1328 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306570148.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:58 Heat of formation + Delta-G solvation = -100.165346 kcal Electronic energy + Delta-G solvation = -15011.029589 eV Core-core repulsion = 12097.301871 eV Total energy + Delta-G solvation = -2913.727718 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.48182 -39.51615 -38.15101 -35.10417 -34.28226 -32.17677 -30.58746 -28.54479 -25.61247 -23.51531 -22.06164 -20.31822 -17.80170 -17.61379 -17.22528 -16.92048 -15.39974 -15.07331 -14.99889 -14.89061 -14.37122 -14.21722 -13.97092 -12.81569 -12.68129 -12.49609 -11.78016 -11.62446 -11.34105 -11.15339 -10.46549 -10.42576 -10.40887 -9.90183 -9.17121 -8.60647 -8.46371 -7.43316 -6.43844 -4.11924 1.35787 1.67778 3.05334 3.17495 3.23955 3.38228 3.78698 3.94974 3.99140 4.51806 4.67061 5.02257 5.07018 5.36943 5.47344 5.70635 6.12304 6.15039 6.35382 6.54821 6.73964 7.01910 7.35816 7.56994 7.87463 7.91890 8.62626 9.03721 9.80666 10.73399 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039162 B = 0.008228 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.807860 B = 3402.126798 C = 3645.306510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.044 3.956 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.386 4.386 8 H 0.097 0.903 9 O -0.201 6.201 10 C 0.443 3.557 11 O -0.542 6.542 12 C -0.193 4.193 13 C 0.280 3.720 14 N -0.858 5.858 15 C -0.218 4.218 16 C -0.035 4.035 17 C -0.222 4.222 18 C 0.181 3.819 19 F -0.129 7.129 20 H 0.271 0.729 21 H 0.408 0.592 22 H 0.401 0.599 23 H 0.129 0.871 24 H 0.131 0.869 25 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 -11.069 -2.957 11.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.161 4.161 3 Si 0.769 3.231 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.462 4.462 8 H 0.114 0.886 9 O -0.108 6.108 10 C 0.289 3.711 11 O -0.440 6.440 12 C -0.200 4.200 13 C 0.170 3.830 14 N -0.394 5.394 15 C -0.241 4.241 16 C -0.054 4.054 17 C -0.243 4.243 18 C 0.160 3.840 19 F -0.108 7.108 20 H 0.080 0.920 21 H 0.238 0.762 22 H 0.230 0.770 23 H 0.147 0.853 24 H 0.149 0.851 25 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.358 -10.833 -2.899 11.296 hybrid contribution 0.494 1.104 -0.078 1.212 sum -0.864 -9.729 -2.977 10.211 Atomic orbital electron populations 1.70004 1.06055 1.27814 1.45731 1.25375 0.95809 0.98893 0.96012 0.85660 0.79131 0.79604 0.78732 1.19839 1.20239 1.18990 1.21291 0.92493 0.79845 1.52582 0.88557 1.84065 1.38974 1.13095 1.74638 1.20359 0.85845 0.85109 0.79815 1.90674 1.14950 1.87820 1.50522 1.18721 1.12468 0.96644 0.92177 1.17349 0.89757 0.90780 0.85072 1.42396 1.67404 1.24962 1.04675 1.20478 1.08973 0.95648 0.99017 1.20687 0.95369 0.98510 0.90871 1.20701 1.08041 0.95790 0.99785 1.17399 0.95427 0.91360 0.79784 1.91523 1.90593 1.83560 1.45076 0.91959 0.76220 0.77034 0.85338 0.85083 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.49 13.67 55.49 0.76 -24.73 15 2 C 0.04 1.25 5.49 -17.52 -0.10 1.15 15 3 Si 0.94 21.41 29.55 -169.99 -5.02 16.39 15 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 7 C -0.39 -11.62 9.65 30.93 0.30 -11.32 15 8 H 0.10 2.90 6.86 -52.49 -0.36 2.54 15 9 O -0.20 -6.01 9.75 -21.91 -0.21 -6.22 15 10 C 0.44 11.78 5.72 34.32 0.20 11.98 15 11 O -0.54 -15.51 16.36 -19.32 -0.32 -15.82 15 12 C -0.19 -4.20 5.77 -104.76 -0.60 -4.80 15 13 C 0.28 4.90 6.77 -83.60 -0.57 4.34 15 14 N -0.86 -13.34 8.99 32.55 0.29 -13.05 15 15 C -0.22 -2.97 9.87 -39.42 -0.39 -3.36 15 16 C -0.04 -0.45 10.02 -39.56 -0.40 -0.85 15 17 C -0.22 -3.36 10.00 -39.55 -0.40 -3.75 15 18 C 0.18 3.59 7.29 -38.95 -0.28 3.31 15 19 F -0.13 -2.80 16.83 2.25 0.04 -2.76 15 20 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 21 H 0.41 7.28 7.68 -40.82 -0.31 6.96 15 22 H 0.40 4.49 8.83 -40.82 -0.36 4.13 15 23 H 0.13 1.31 8.06 -52.48 -0.42 0.88 15 24 H 0.13 1.14 8.06 -52.49 -0.42 0.72 15 25 H 0.13 1.65 8.06 -52.48 -0.42 1.22 15 LS Contribution 242.91 15.07 3.66 3.66 Total: -1.00 -34.67 242.91 -4.48 -39.15 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -1.44 Total: 6.70 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -2.24 Total: -3.30 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 1.05 Total: -37.79 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.53 Total: -22.05 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.04 Total: -2.76 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -34.67 -4.48 -39.15 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306570148.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.020 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds