Wall clock time and date at job start Mon Mar 30 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 119.99686 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99841 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99850 * 3 2 1 6 6 H 1.48496 * 109.47209 * 149.99888 * 3 2 1 7 7 C 1.38781 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00006 * 179.97438 * 7 2 1 9 9 O 1.34874 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.34809 * 116.99924 * 179.97438 * 9 7 2 11 11 O 1.21571 * 119.99880 * 0.02562 * 10 9 7 12 12 C 1.47092 * 119.99761 * 180.02562 * 10 9 7 13 13 C 1.40532 * 120.24128 * 89.72480 * 12 10 9 14 14 N 1.38853 * 120.16393 * 359.97438 * 13 12 10 15 15 C 1.38822 * 119.66507 * 179.69699 * 13 12 10 16 16 C 1.38090 * 120.14695 * 0.60055 * 15 13 12 17 17 C 1.38453 * 120.48204 * 359.67392 * 16 15 13 18 18 C 1.38114 * 120.33732 * 0.02562 * 17 16 15 19 19 F 1.35093 * 120.07954 * 179.97438 * 18 17 16 20 20 H 0.96991 * 120.00483 * 0.02562 * 1 2 3 21 21 H 0.97004 * 120.00107 * 359.97438 * 14 13 12 22 22 H 0.97001 * 120.00600 * 179.97438 * 14 13 12 23 23 H 1.08005 * 119.92516 * 180.30059 * 15 13 12 24 24 H 1.07991 * 119.76022 * 179.69742 * 16 15 13 25 25 H 1.08005 * 119.83639 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4403 0.7000 7 6 2.0084 -1.2019 0.0005 8 1 3.0884 -1.2018 0.0001 9 8 1.3340 -2.3699 0.0005 10 6 2.0683 -3.5005 0.0005 11 8 3.2823 -3.4368 0.0010 12 6 1.4005 -4.8111 0.0000 13 6 1.0745 -5.4388 -1.2144 14 7 1.3806 -4.8246 -2.4215 15 6 0.4500 -6.6786 -1.2010 16 6 0.1398 -7.2859 -0.0002 17 6 0.4530 -6.6704 1.1997 18 6 1.0799 -5.4397 1.2097 19 9 1.3827 -4.8436 2.3836 20 1 -0.4850 0.8399 -0.0004 21 1 1.8203 -3.9600 -2.4280 22 1 1.1548 -5.2601 -3.2583 23 1 0.2019 -7.1670 -2.1318 24 1 -0.3504 -8.2481 0.0029 25 1 0.2060 -7.1550 2.1328 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306570148.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:58 Heat of formation + Delta-G solvation = -125.503721 kcal Electronic energy + Delta-G solvation = -15012.128343 eV Core-core repulsion = 12097.301871 eV Total energy + Delta-G solvation = -2914.826472 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.03441 -41.32948 -39.76258 -37.26930 -35.53735 -34.38567 -32.01222 -29.80578 -27.72749 -25.13039 -23.37163 -22.08460 -19.98963 -19.22114 -18.72780 -18.46598 -17.24227 -16.70127 -16.48056 -16.26360 -16.21079 -15.98339 -15.63982 -14.58000 -14.02697 -13.98183 -13.69985 -13.24599 -12.85364 -12.63990 -12.42556 -12.23798 -12.10267 -11.62338 -11.25958 -10.76856 -9.85530 -8.70562 -8.60154 -6.42747 0.03009 0.43168 1.14151 1.30493 1.48048 1.51014 2.06820 2.56238 2.68093 2.77587 2.89667 3.30578 3.92704 4.11141 4.36054 4.41543 4.66189 4.93292 5.04315 5.12115 5.21193 5.40284 5.72770 5.80403 6.22912 6.46408 6.78139 6.82079 7.63613 8.59127 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039162 B = 0.008228 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.807860 B = 3402.126798 C = 3645.306510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.001 4.001 3 Si 1.022 2.978 4 H -0.254 1.254 5 H -0.258 1.258 6 H -0.265 1.265 7 C -0.428 4.428 8 H 0.082 0.918 9 O -0.232 6.232 10 C 0.450 3.550 11 O -0.576 6.576 12 C -0.250 4.250 13 C 0.268 3.732 14 N -0.854 5.854 15 C -0.199 4.199 16 C -0.012 4.012 17 C -0.209 4.209 18 C 0.142 3.858 19 F -0.154 7.154 20 H 0.281 0.719 21 H 0.393 0.607 22 H 0.421 0.579 23 H 0.176 0.824 24 H 0.190 0.810 25 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.604 -12.877 -3.862 13.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.202 4.202 3 Si 0.839 3.161 4 H -0.178 1.178 5 H -0.182 1.182 6 H -0.189 1.189 7 C -0.504 4.504 8 H 0.100 0.900 9 O -0.139 6.139 10 C 0.298 3.702 11 O -0.474 6.474 12 C -0.257 4.257 13 C 0.159 3.841 14 N -0.391 5.391 15 C -0.222 4.222 16 C -0.030 4.030 17 C -0.230 4.230 18 C 0.122 3.878 19 F -0.133 7.133 20 H 0.091 0.909 21 H 0.220 0.780 22 H 0.254 0.746 23 H 0.193 0.807 24 H 0.208 0.792 25 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.495 -12.687 -3.832 13.486 hybrid contribution 0.782 1.467 0.165 1.671 sum -1.713 -11.220 -3.667 11.927 Atomic orbital electron populations 1.70087 1.07805 1.29672 1.45935 1.26647 0.96903 1.02410 0.94213 0.84585 0.77556 0.74049 0.79861 1.17783 1.18197 1.18949 1.21521 0.92285 0.81109 1.55473 0.90025 1.84093 1.40020 1.14039 1.75746 1.21342 0.85721 0.86097 0.77048 1.90606 1.16631 1.88564 1.51598 1.18804 1.16801 0.94984 0.95121 1.17707 0.90258 0.92215 0.83961 1.42404 1.66956 1.24354 1.05375 1.21078 1.06048 0.93373 1.01663 1.21409 0.92777 0.99788 0.89069 1.21165 1.05790 0.93503 1.02538 1.17961 0.97958 0.93455 0.78443 1.91447 1.91221 1.84388 1.46246 0.90919 0.77972 0.74597 0.80660 0.79243 0.81778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.60 13.67 21.63 0.30 -54.30 15 2 C 0.00 -0.05 5.49 84.88 0.47 0.42 15 3 Si 1.02 44.38 29.55 68.60 2.03 46.40 15 4 H -0.25 -10.19 7.11 99.48 0.71 -9.48 15 5 H -0.26 -10.34 7.11 99.48 0.71 -9.63 15 6 H -0.27 -11.39 7.11 99.48 0.71 -10.69 15 7 C -0.43 -27.25 9.65 67.95 0.66 -26.59 15 8 H 0.08 5.26 6.86 -2.91 -0.02 5.24 15 9 O -0.23 -14.73 9.75 10.34 0.10 -14.62 15 10 C 0.45 25.51 5.72 70.15 0.40 25.91 15 11 O -0.58 -35.16 16.36 19.61 0.32 -34.84 15 12 C -0.25 -11.23 5.77 -19.96 -0.12 -11.34 15 13 C 0.27 9.15 6.77 38.73 0.26 9.41 15 14 N -0.85 -26.31 8.99 -50.92 -0.46 -26.77 15 15 C -0.20 -4.51 9.87 22.37 0.22 -4.29 15 16 C -0.01 -0.24 10.02 22.29 0.22 -0.01 15 17 C -0.21 -5.70 10.00 22.29 0.22 -5.47 15 18 C 0.14 5.72 7.29 22.68 0.17 5.89 15 19 F -0.15 -7.06 16.83 44.97 0.76 -6.30 15 20 H 0.28 15.36 8.31 -92.71 -0.77 14.59 15 21 H 0.39 14.67 7.68 -92.71 -0.71 13.96 15 22 H 0.42 8.71 8.83 -92.71 -0.82 7.89 15 23 H 0.18 2.37 8.06 -2.91 -0.02 2.35 15 24 H 0.19 1.68 8.06 -2.91 -0.02 1.66 15 25 H 0.16 3.39 8.06 -2.91 -0.02 3.37 15 Total: -1.00 -82.53 242.91 5.28 -77.26 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.27 Total: 19.26 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 2.50 Total: -6.09 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -0.16 Total: -81.07 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: 0.42 Total: -49.46 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.76 Total: -6.30 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -82.53 5.28 -77.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306570148.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.247 kcal (2) G-P(sol) polarization free energy of solvation -82.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds