Wall clock time and date at job start Mon Mar 30 2020 02:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39027 * 119.73123 * 2 1 4 4 C 1.38442 * 120.68127 * 179.97438 * 3 2 1 5 5 C 1.38054 * 120.12909 * 0.29761 * 4 3 2 6 6 F 1.35100 * 120.26464 * 179.69716 * 5 4 3 7 7 C 1.41690 * 119.46228 * 359.46210 * 5 4 3 8 8 C 1.40012 * 120.32709 * 180.26946 * 7 5 4 9 9 H 1.08003 * 119.99622 * 216.09117 * 8 7 5 10 10 C 1.46606 * 120.00260 * 36.09073 * 8 7 5 11 11 N 1.29475 * 119.99836 * 18.55041 * 10 8 7 12 12 Si 1.86794 * 119.99783 * 198.54830 * 10 8 7 13 13 H 1.48494 * 109.47645 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46854 * 120.00227 * 12 10 8 15 15 H 1.48505 * 109.47098 * 239.99578 * 12 10 8 16 16 C 1.36243 * 119.72861 * 180.02562 * 2 1 3 17 17 N 1.48017 * 120.07989 * 359.97438 * 16 2 1 18 18 O 1.31690 * 119.99852 * 89.99824 * 17 16 2 19 19 O 1.31703 * 119.99873 * 270.00275 * 17 16 2 20 20 H 1.09003 * 109.46369 * 89.99922 * 1 2 3 21 21 H 1.08996 * 109.47307 * 210.00067 * 1 2 3 22 22 H 1.08996 * 109.47108 * 330.00621 * 1 2 3 23 23 H 1.08005 * 119.66209 * 0.02562 * 3 2 1 24 24 H 1.07997 * 119.93659 * 180.02562 * 4 3 2 25 25 H 0.96993 * 120.00094 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1966 1.2073 0.0000 4 6 3.5808 1.2302 0.0005 5 6 4.2935 0.0479 -0.0051 6 9 5.6443 0.0671 -0.0108 7 6 3.5967 -1.1859 0.0001 8 6 4.3013 -2.3958 0.0002 9 1 3.9179 -3.2439 -0.5476 10 6 5.5595 -2.5113 0.7437 11 7 5.8436 -1.6550 1.6725 12 14 6.7527 -3.8938 0.3512 13 1 6.1982 -4.7307 -0.7429 14 1 8.0532 -3.3186 -0.0767 15 1 6.9558 -4.7308 1.5610 16 6 2.1827 -1.1831 -0.0005 17 7 1.4383 -2.4625 -0.0005 18 8 1.1067 -3.0313 -1.1410 19 8 1.1076 -3.0319 1.1401 20 1 -0.3632 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5137 23 1 1.6467 2.1368 0.0004 24 1 4.1041 2.1749 0.0009 25 1 6.6761 -1.7312 2.1642 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306596876.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:57 Heat of formation + Delta-G solvation = -11.971948 kcal Electronic energy + Delta-G solvation = -15373.303308 eV Core-core repulsion = 12463.399943 eV Total energy + Delta-G solvation = -2909.903365 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.40722 -38.84894 -36.90401 -34.27652 -33.34162 -31.76918 -30.92930 -27.21374 -25.34766 -24.72627 -21.30063 -20.66534 -17.81540 -17.45957 -17.20307 -16.16571 -15.42026 -14.90357 -14.25095 -14.17059 -14.01348 -13.18830 -13.10356 -12.55157 -12.23478 -11.80607 -11.60294 -11.46115 -11.08898 -10.94644 -10.64513 -10.45914 -10.38749 -9.86625 -9.74208 -9.59616 -8.35985 -7.71697 -7.41165 -5.02692 0.85175 1.93215 2.23529 2.39252 2.82675 2.84356 2.90834 3.58232 3.97902 4.64233 5.32027 5.42997 5.60712 5.82462 5.90789 5.96658 6.18829 6.27788 6.39383 6.62330 6.83782 7.00184 7.16993 7.24136 7.46057 7.72301 7.82569 7.91548 8.19235 9.49395 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.026848 B = 0.013069 C = 0.009580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.639993 B = 2141.893421 C = 2922.124381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.011 4.011 3 C -0.223 4.223 4 C -0.100 4.100 5 C 0.038 3.962 6 F -0.133 7.133 7 C 0.115 3.885 8 C -0.447 4.447 9 H 0.096 0.904 10 C 0.076 3.924 11 N -0.721 5.721 12 Si 0.927 3.073 13 H -0.250 1.250 14 H -0.262 1.262 15 H -0.265 1.265 16 C -0.110 4.110 17 N 0.013 4.987 18 O -0.187 6.187 19 O -0.170 6.170 20 H 0.072 0.928 21 H 0.057 0.943 22 H 0.072 0.928 23 H 0.118 0.882 24 H 0.117 0.883 25 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 2.993 -1.065 3.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.012 4.012 3 C -0.243 4.243 4 C -0.119 4.119 5 C 0.017 3.983 6 F -0.112 7.112 7 C 0.110 3.890 8 C -0.472 4.472 9 H 0.114 0.886 10 C -0.155 4.155 11 N -0.339 5.339 12 Si 0.749 3.251 13 H -0.173 1.173 14 H -0.187 1.187 15 H -0.189 1.189 16 C -0.193 4.193 17 N 0.507 4.493 18 O -0.389 6.389 19 O -0.377 6.377 20 H 0.090 0.910 21 H 0.076 0.924 22 H 0.091 0.909 23 H 0.136 0.864 24 H 0.135 0.865 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.168 3.725 -0.882 3.831 hybrid contribution 0.594 -0.860 0.020 1.045 sum 0.762 2.864 -0.862 3.087 Atomic orbital electron populations 1.20880 0.91941 1.02715 1.02315 1.18700 0.94963 0.90742 0.96806 1.19879 0.92746 0.94973 1.16700 1.20781 0.94445 0.96228 1.00460 1.17479 0.76880 0.92383 1.11584 1.91365 1.28674 1.97030 1.94082 1.16831 0.87319 0.93640 0.91230 1.20821 1.03615 0.97540 1.25178 0.88567 1.27443 0.97832 0.97722 0.92535 1.69016 1.22602 1.31033 1.11251 0.85911 0.79005 0.79750 0.80462 1.17329 1.18693 1.18925 1.19262 0.90601 0.78591 1.30821 1.50297 0.95692 1.02349 1.00999 1.96159 1.59335 1.67370 1.16053 1.96170 1.58607 1.66897 1.15989 0.90978 0.92379 0.90883 0.86366 0.86532 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 9.74 36.01 0.35 -1.82 15 2 C -0.01 -0.23 5.84 -105.04 -0.61 -0.84 15 3 C -0.22 -4.43 9.70 -39.21 -0.38 -4.81 15 4 C -0.10 -2.10 10.01 -39.57 -0.40 -2.49 15 5 C 0.04 0.92 6.76 -38.33 -0.26 0.66 15 6 F -0.13 -3.29 14.21 2.25 0.03 -3.26 15 7 C 0.11 3.00 5.46 -106.71 -0.58 2.41 15 8 C -0.45 -11.76 8.73 -35.54 -0.31 -12.07 15 9 H 0.10 2.57 7.89 -52.48 -0.41 2.15 15 10 C 0.08 1.83 4.72 -15.17 -0.07 1.76 15 11 N -0.72 -17.52 11.10 55.99 0.62 -16.89 15 12 Si 0.93 17.88 29.68 -169.99 -5.04 12.84 15 13 H -0.25 -4.87 7.11 56.52 0.40 -4.47 15 14 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 15 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 16 C -0.11 -2.75 6.23 -79.46 -0.50 -3.25 15 17 N 0.01 0.32 3.09 34.20 0.11 0.43 15 18 O -0.19 -4.67 19.97 -31.56 -0.63 -5.30 15 19 O -0.17 -4.34 19.87 -31.57 -0.63 -4.97 15 20 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 21 H 0.06 1.10 7.28 -51.93 -0.38 0.72 15 22 H 0.07 1.08 8.08 -51.93 -0.42 0.66 15 23 H 0.12 1.93 8.06 -52.48 -0.42 1.51 15 24 H 0.12 2.09 8.06 -52.49 -0.42 1.66 15 25 H 0.30 6.42 8.27 -40.82 -0.34 6.08 15 LS Contribution 242.20 15.07 3.65 3.65 Total: -1.00 -27.61 242.20 -6.26 -33.87 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -1.61 Total: 0.09 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -2.76 Total: -20.45 kcal Atomic # 7 Polarization: -17.19 SS G_CDS: 0.73 Total: -16.47 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -1.26 Total: -10.27 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.03 Total: -3.26 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.04 Total: 12.84 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.61 -6.26 -33.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306596876.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.898 kcal (2) G-P(sol) polarization free energy of solvation -27.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds