Wall clock time and date at job start Mon Mar 30 2020 02:57:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.39027 * 119.73123 * 2 1
4 4 C 1.38442 * 120.68127 * 179.97438 * 3 2 1
5 5 C 1.38054 * 120.12909 * 0.29761 * 4 3 2
6 6 F 1.35100 * 120.26464 * 179.69716 * 5 4 3
7 7 C 1.41690 * 119.46228 * 359.46210 * 5 4 3
8 8 C 1.40012 * 120.32709 * 180.26946 * 7 5 4
9 9 H 1.08003 * 119.99622 * 216.09117 * 8 7 5
10 10 C 1.46606 * 120.00260 * 36.09073 * 8 7 5
11 11 N 1.29475 * 119.99836 * 18.55041 * 10 8 7
12 12 Si 1.86794 * 119.99783 * 198.54830 * 10 8 7
13 13 H 1.48494 * 109.47645 * 0.02562 * 12 10 8
14 14 H 1.48504 * 109.46854 * 120.00227 * 12 10 8
15 15 H 1.48505 * 109.47098 * 239.99578 * 12 10 8
16 16 C 1.36243 * 119.72861 * 180.02562 * 2 1 3
17 17 N 1.48017 * 120.07989 * 359.97438 * 16 2 1
18 18 O 1.31690 * 119.99852 * 89.99824 * 17 16 2
19 19 O 1.31703 * 119.99873 * 270.00275 * 17 16 2
20 20 H 1.09003 * 109.46369 * 89.99922 * 1 2 3
21 21 H 1.08996 * 109.47307 * 210.00067 * 1 2 3
22 22 H 1.08996 * 109.47108 * 330.00621 * 1 2 3
23 23 H 1.08005 * 119.66209 * 0.02562 * 3 2 1
24 24 H 1.07997 * 119.93659 * 180.02562 * 4 3 2
25 25 H 0.96993 * 120.00094 * 180.02562 * 11 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1966 1.2073 0.0000
4 6 3.5808 1.2302 0.0005
5 6 4.2935 0.0479 -0.0051
6 9 5.6443 0.0671 -0.0108
7 6 3.5967 -1.1859 0.0001
8 6 4.3013 -2.3958 0.0002
9 1 3.9179 -3.2439 -0.5476
10 6 5.5595 -2.5113 0.7437
11 7 5.8436 -1.6550 1.6725
12 14 6.7527 -3.8938 0.3512
13 1 6.1982 -4.7307 -0.7429
14 1 8.0532 -3.3186 -0.0767
15 1 6.9558 -4.7308 1.5610
16 6 2.1827 -1.1831 -0.0005
17 7 1.4383 -2.4625 -0.0005
18 8 1.1067 -3.0313 -1.1410
19 8 1.1076 -3.0319 1.1401
20 1 -0.3632 0.0000 -1.0277
21 1 -0.3634 -0.8899 0.5138
22 1 -0.3633 0.8900 0.5137
23 1 1.6467 2.1368 0.0004
24 1 4.1041 2.1749 0.0009
25 1 6.6761 -1.7312 2.1642
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306596876.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:57:57
Heat of formation + Delta-G solvation = -11.971948 kcal
Electronic energy + Delta-G solvation = -15373.303308 eV
Core-core repulsion = 12463.399943 eV
Total energy + Delta-G solvation = -2909.903365 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 225.059 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-47.40722 -38.84894 -36.90401 -34.27652 -33.34162 -31.76918 -30.92930 -27.21374
-25.34766 -24.72627 -21.30063 -20.66534 -17.81540 -17.45957 -17.20307 -16.16571
-15.42026 -14.90357 -14.25095 -14.17059 -14.01348 -13.18830 -13.10356 -12.55157
-12.23478 -11.80607 -11.60294 -11.46115 -11.08898 -10.94644 -10.64513 -10.45914
-10.38749 -9.86625 -9.74208 -9.59616 -8.35985 -7.71697 -7.41165 -5.02692
0.85175 1.93215 2.23529 2.39252 2.82675 2.84356 2.90834 3.58232
3.97902 4.64233 5.32027 5.42997 5.60712 5.82462 5.90789 5.96658
6.18829 6.27788 6.39383 6.62330 6.83782 7.00184 7.16993 7.24136
7.46057 7.72301 7.82569 7.91548 8.19235 9.49395
Molecular weight = 225.06amu
Principal moments of inertia in cm(-1)
A = 0.026848 B = 0.013069 C = 0.009580
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1042.639993 B = 2141.893421 C = 2922.124381
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.011 4.011
3 C -0.223 4.223
4 C -0.100 4.100
5 C 0.038 3.962
6 F -0.133 7.133
7 C 0.115 3.885
8 C -0.447 4.447
9 H 0.096 0.904
10 C 0.076 3.924
11 N -0.721 5.721
12 Si 0.927 3.073
13 H -0.250 1.250
14 H -0.262 1.262
15 H -0.265 1.265
16 C -0.110 4.110
17 N 0.013 4.987
18 O -0.187 6.187
19 O -0.170 6.170
20 H 0.072 0.928
21 H 0.057 0.943
22 H 0.072 0.928
23 H 0.118 0.882
24 H 0.117 0.883
25 H 0.301 0.699
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.427 2.993 -1.065 3.205
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C -0.012 4.012
3 C -0.243 4.243
4 C -0.119 4.119
5 C 0.017 3.983
6 F -0.112 7.112
7 C 0.110 3.890
8 C -0.472 4.472
9 H 0.114 0.886
10 C -0.155 4.155
11 N -0.339 5.339
12 Si 0.749 3.251
13 H -0.173 1.173
14 H -0.187 1.187
15 H -0.189 1.189
16 C -0.193 4.193
17 N 0.507 4.493
18 O -0.389 6.389
19 O -0.377 6.377
20 H 0.090 0.910
21 H 0.076 0.924
22 H 0.091 0.909
23 H 0.136 0.864
24 H 0.135 0.865
25 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 0.168 3.725 -0.882 3.831
hybrid contribution 0.594 -0.860 0.020 1.045
sum 0.762 2.864 -0.862 3.087
Atomic orbital electron populations
1.20880 0.91941 1.02715 1.02315 1.18700 0.94963 0.90742 0.96806
1.19879 0.92746 0.94973 1.16700 1.20781 0.94445 0.96228 1.00460
1.17479 0.76880 0.92383 1.11584 1.91365 1.28674 1.97030 1.94082
1.16831 0.87319 0.93640 0.91230 1.20821 1.03615 0.97540 1.25178
0.88567 1.27443 0.97832 0.97722 0.92535 1.69016 1.22602 1.31033
1.11251 0.85911 0.79005 0.79750 0.80462 1.17329 1.18693 1.18925
1.19262 0.90601 0.78591 1.30821 1.50297 0.95692 1.02349 1.00999
1.96159 1.59335 1.67370 1.16053 1.96170 1.58607 1.66897 1.15989
0.90978 0.92379 0.90883 0.86366 0.86532 0.88671
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.17 9.74 36.01 0.35 -1.82 15
2 C -0.01 -0.23 5.84 -105.04 -0.61 -0.84 15
3 C -0.22 -4.43 9.70 -39.21 -0.38 -4.81 15
4 C -0.10 -2.10 10.01 -39.57 -0.40 -2.49 15
5 C 0.04 0.92 6.76 -38.33 -0.26 0.66 15
6 F -0.13 -3.29 14.21 2.25 0.03 -3.26 15
7 C 0.11 3.00 5.46 -106.71 -0.58 2.41 15
8 C -0.45 -11.76 8.73 -35.54 -0.31 -12.07 15
9 H 0.10 2.57 7.89 -52.48 -0.41 2.15 15
10 C 0.08 1.83 4.72 -15.17 -0.07 1.76 15
11 N -0.72 -17.52 11.10 55.99 0.62 -16.89 15
12 Si 0.93 17.88 29.68 -169.99 -5.04 12.84 15
13 H -0.25 -4.87 7.11 56.52 0.40 -4.47 15
14 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15
15 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15
16 C -0.11 -2.75 6.23 -79.46 -0.50 -3.25 15
17 N 0.01 0.32 3.09 34.20 0.11 0.43 15
18 O -0.19 -4.67 19.97 -31.56 -0.63 -5.30 15
19 O -0.17 -4.34 19.87 -31.57 -0.63 -4.97 15
20 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15
21 H 0.06 1.10 7.28 -51.93 -0.38 0.72 15
22 H 0.07 1.08 8.08 -51.93 -0.42 0.66 15
23 H 0.12 1.93 8.06 -52.48 -0.42 1.51 15
24 H 0.12 2.09 8.06 -52.49 -0.42 1.66 15
25 H 0.30 6.42 8.27 -40.82 -0.34 6.08 15
LS Contribution 242.20 15.07 3.65 3.65
Total: -1.00 -27.61 242.20 -6.26 -33.87
By element:
Atomic # 1 Polarization: 1.70 SS G_CDS: -1.61 Total: 0.09 kcal
Atomic # 6 Polarization: -17.69 SS G_CDS: -2.76 Total: -20.45 kcal
Atomic # 7 Polarization: -17.19 SS G_CDS: 0.73 Total: -16.47 kcal
Atomic # 8 Polarization: -9.02 SS G_CDS: -1.26 Total: -10.27 kcal
Atomic # 9 Polarization: -3.29 SS G_CDS: 0.03 Total: -3.26 kcal
Atomic # 14 Polarization: 17.88 SS G_CDS: -5.04 Total: 12.84 kcal
Total LS contribution 3.65 Total: 3.65 kcal
Total: -27.61 -6.26 -33.87 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306596876.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.898 kcal
(2) G-P(sol) polarization free energy of solvation -27.606 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.708 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.870 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.972 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds