Wall clock time and date at job start Mon Mar 30 2020 02:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39027 * 119.73123 * 2 1 4 4 C 1.38442 * 120.68127 * 179.97438 * 3 2 1 5 5 C 1.38054 * 120.12909 * 0.29761 * 4 3 2 6 6 F 1.35100 * 120.26464 * 179.69716 * 5 4 3 7 7 C 1.41690 * 119.46228 * 359.46210 * 5 4 3 8 8 C 1.40012 * 120.32709 * 180.26946 * 7 5 4 9 9 H 1.08003 * 119.99622 * 216.09117 * 8 7 5 10 10 C 1.46606 * 120.00260 * 36.09073 * 8 7 5 11 11 N 1.29475 * 119.99836 * 18.55041 * 10 8 7 12 12 Si 1.86794 * 119.99783 * 198.54830 * 10 8 7 13 13 H 1.48494 * 109.47645 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46854 * 120.00227 * 12 10 8 15 15 H 1.48505 * 109.47098 * 239.99578 * 12 10 8 16 16 C 1.36243 * 119.72861 * 180.02562 * 2 1 3 17 17 N 1.48017 * 120.07989 * 359.97438 * 16 2 1 18 18 O 1.31690 * 119.99852 * 89.99824 * 17 16 2 19 19 O 1.31703 * 119.99873 * 270.00275 * 17 16 2 20 20 H 1.09003 * 109.46369 * 89.99922 * 1 2 3 21 21 H 1.08996 * 109.47307 * 210.00067 * 1 2 3 22 22 H 1.08996 * 109.47108 * 330.00621 * 1 2 3 23 23 H 1.08005 * 119.66209 * 0.02562 * 3 2 1 24 24 H 1.07997 * 119.93659 * 180.02562 * 4 3 2 25 25 H 0.96993 * 120.00094 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1966 1.2073 0.0000 4 6 3.5808 1.2302 0.0005 5 6 4.2935 0.0479 -0.0051 6 9 5.6443 0.0671 -0.0108 7 6 3.5967 -1.1859 0.0001 8 6 4.3013 -2.3958 0.0002 9 1 3.9179 -3.2439 -0.5476 10 6 5.5595 -2.5113 0.7437 11 7 5.8436 -1.6550 1.6725 12 14 6.7527 -3.8938 0.3512 13 1 6.1982 -4.7307 -0.7429 14 1 8.0532 -3.3186 -0.0767 15 1 6.9558 -4.7308 1.5610 16 6 2.1827 -1.1831 -0.0005 17 7 1.4383 -2.4625 -0.0005 18 8 1.1067 -3.0313 -1.1410 19 8 1.1076 -3.0319 1.1401 20 1 -0.3632 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5137 23 1 1.6467 2.1368 0.0004 24 1 4.1041 2.1749 0.0009 25 1 6.6761 -1.7312 2.1642 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306596876.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:57 Heat of formation + Delta-G solvation = -26.756371 kcal Electronic energy + Delta-G solvation = -15373.944409 eV Core-core repulsion = 12463.399943 eV Total energy + Delta-G solvation = -2910.544466 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.24635 -40.69446 -38.78628 -36.03986 -35.35330 -33.43478 -32.72161 -28.99999 -27.02224 -26.58770 -23.07851 -22.45372 -19.64792 -19.32689 -19.20064 -17.96862 -17.17369 -16.68063 -16.03414 -15.92842 -15.84893 -14.75830 -14.63291 -14.16063 -13.90666 -13.64909 -13.19121 -13.00788 -12.75558 -12.58382 -12.47988 -12.37114 -12.08509 -11.78050 -11.70100 -11.30267 -10.13228 -9.48941 -9.16085 -6.90999 -1.14669 0.14158 0.46894 0.50957 1.23441 1.30052 1.39952 2.00788 2.25051 2.83743 3.65374 3.85959 3.99393 4.20187 4.37244 4.46999 4.56453 4.61654 4.82923 4.89093 5.07358 5.29904 5.43507 5.51035 5.65837 5.71914 5.95937 6.11036 6.37706 7.78799 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.026848 B = 0.013069 C = 0.009580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.639993 B = 2141.893421 C = 2922.124381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.020 4.020 3 C -0.201 4.201 4 C -0.088 4.088 5 C 0.003 3.997 6 F -0.142 7.142 7 C 0.089 3.911 8 C -0.496 4.496 9 H 0.073 0.927 10 C 0.042 3.958 11 N -0.751 5.751 12 Si 0.991 3.009 13 H -0.260 1.260 14 H -0.246 1.246 15 H -0.250 1.250 16 C -0.141 4.141 17 N 0.016 4.984 18 O -0.184 6.184 19 O -0.193 6.193 20 H 0.088 0.912 21 H 0.039 0.961 22 H 0.111 0.889 23 H 0.170 0.830 24 H 0.154 0.846 25 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 4.848 -1.173 5.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.021 4.021 3 C -0.220 4.220 4 C -0.107 4.107 5 C -0.017 4.017 6 F -0.121 7.121 7 C 0.085 3.915 8 C -0.521 4.521 9 H 0.091 0.909 10 C -0.186 4.186 11 N -0.370 5.370 12 Si 0.808 3.192 13 H -0.184 1.184 14 H -0.170 1.170 15 H -0.174 1.174 16 C -0.223 4.223 17 N 0.509 4.491 18 O -0.390 6.390 19 O -0.395 6.395 20 H 0.107 0.893 21 H 0.058 0.942 22 H 0.130 0.870 23 H 0.187 0.813 24 H 0.172 0.828 25 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.130 5.594 -0.940 5.674 hybrid contribution 0.534 -1.272 0.010 1.379 sum 0.404 4.322 -0.930 4.439 Atomic orbital electron populations 1.20961 0.89090 1.03749 1.03690 1.19328 0.97260 0.90022 0.95511 1.20538 0.92453 0.96105 1.12889 1.21284 0.95186 0.96457 0.97730 1.17806 0.76899 0.93123 1.13913 1.91325 1.29260 1.97080 1.94396 1.17223 0.88125 0.94599 0.91570 1.20852 1.06126 0.97425 1.27669 0.90854 1.28220 0.98490 1.00052 0.91815 1.68988 1.23661 1.32541 1.11845 0.85028 0.77092 0.76780 0.80293 1.18399 1.16990 1.17407 1.19788 0.90818 0.79172 1.32516 1.50472 0.95345 1.02572 1.00721 1.96127 1.59156 1.67496 1.16178 1.96153 1.59727 1.67441 1.16183 0.89302 0.94190 0.86995 0.81276 0.82808 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.83 9.74 71.24 0.69 -3.14 15 2 C -0.02 -0.80 5.84 -20.14 -0.12 -0.92 15 3 C -0.20 -7.08 9.70 22.51 0.22 -6.87 15 4 C -0.09 -3.41 10.01 22.27 0.22 -3.19 15 5 C 0.00 0.16 6.76 23.08 0.16 0.32 15 6 F -0.14 -7.06 14.21 44.97 0.64 -6.43 15 7 C 0.09 4.77 5.46 -21.22 -0.12 4.65 15 8 C -0.50 -27.22 8.73 24.89 0.22 -27.00 15 9 H 0.07 4.17 7.89 -2.91 -0.02 4.15 15 10 C 0.04 2.08 4.72 87.23 0.41 2.49 15 11 N -0.75 -37.09 11.10 23.23 0.26 -36.83 15 12 Si 0.99 37.20 29.68 68.60 2.04 39.24 15 13 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 14 H -0.25 -8.52 7.11 99.48 0.71 -7.82 15 15 H -0.25 -8.72 7.11 99.48 0.71 -8.01 15 16 C -0.14 -7.05 6.23 36.69 0.23 -6.83 15 17 N 0.02 0.84 3.09 -45.72 -0.14 0.70 15 18 O -0.18 -9.36 19.97 3.53 0.07 -9.29 15 19 O -0.19 -10.13 19.87 3.51 0.07 -10.06 15 20 H 0.09 2.60 8.14 -2.39 -0.02 2.58 15 21 H 0.04 1.43 7.28 -2.39 -0.02 1.42 15 22 H 0.11 2.73 8.08 -2.39 -0.02 2.71 15 23 H 0.17 4.31 8.06 -2.91 -0.02 4.29 15 24 H 0.15 4.80 8.06 -2.91 -0.02 4.77 15 25 H 0.31 13.42 8.27 -92.71 -0.77 12.65 15 Total: -1.00 -61.82 242.20 6.08 -55.75 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.23 Total: 7.40 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 1.92 Total: -40.48 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.12 Total: -36.13 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.14 Total: -19.35 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.64 Total: -6.43 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.04 Total: 39.24 kcal Total: -61.82 6.08 -55.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306596876.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.991 kcal (2) G-P(sol) polarization free energy of solvation -61.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds