Wall clock time and date at job start Mon Mar 30 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31477 * 1 3 3 Si 1.86797 * 119.99866 * 2 1 4 4 H 1.48500 * 109.46989 * 275.69592 * 3 2 1 5 5 H 1.48505 * 109.47275 * 35.69334 * 3 2 1 6 6 H 1.48503 * 109.47163 * 155.69350 * 3 2 1 7 7 C 1.38780 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00336 * 339.19533 * 7 2 1 9 9 N 1.37286 * 119.99896 * 159.19291 * 7 2 1 10 10 C 1.34072 * 120.75760 * 318.19149 * 9 7 2 11 11 O 1.21745 * 127.56194 * 0.02562 * 10 9 7 12 12 S 1.77370 * 104.88069 * 180.02562 * 10 9 7 13 13 C 1.76696 * 94.13945 * 0.02562 * 12 10 9 14 14 C 1.33622 * 106.65799 * 359.97438 * 13 12 10 15 15 C 1.52538 * 121.44883 * 180.02562 * 14 13 12 16 16 C 1.52899 * 108.92751 * 341.69685 * 15 14 13 17 17 C 1.53178 * 109.58335 * 52.04859 * 16 15 14 18 18 C 1.50366 * 126.74078 * 179.73399 * 13 12 10 19 19 H 0.97003 * 120.00092 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.56520 * 101.52702 * 15 14 13 21 21 H 1.08996 * 109.56322 * 221.86098 * 15 14 13 22 22 H 1.09005 * 109.45515 * 172.08358 * 16 15 14 23 23 H 1.09004 * 109.45741 * 292.01423 * 16 15 14 24 24 H 1.09003 * 109.59584 * 49.80853 * 17 16 15 25 25 H 1.08994 * 109.60555 * 170.28505 * 17 16 15 26 26 H 1.09003 * 109.60736 * 284.39903 * 18 13 12 27 27 H 1.08997 * 109.61248 * 44.91816 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 2.3759 2.1159 -1.3932 5 1 1.5115 2.6150 0.8169 6 1 3.6013 1.4085 0.5763 7 6 2.0087 -1.2019 0.0005 8 1 1.5216 -2.1066 0.3331 9 7 3.3144 -1.2408 -0.4218 10 6 3.7060 -0.5523 -1.5035 11 8 3.0224 0.1560 -2.2200 12 16 5.4381 -0.8994 -1.6620 13 6 5.4873 -1.9531 -0.2445 14 6 4.2472 -1.9851 0.2522 15 6 3.9079 -2.8044 1.4933 16 6 5.0086 -3.8413 1.7193 17 6 6.3743 -3.1476 1.7235 18 6 6.6885 -2.6783 0.2960 19 1 -0.4850 0.8401 -0.0004 20 1 3.8438 -2.1456 2.3593 21 1 2.9539 -3.3109 1.3467 22 1 4.8500 -4.3362 2.6775 23 1 4.9799 -4.5815 0.9197 24 1 6.3469 -2.2902 2.3959 25 1 7.1401 -3.8496 2.0534 26 1 6.9099 -3.5397 -0.3343 27 1 7.5452 -2.0047 0.3135 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306634965.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:54 Heat of formation + Delta-G solvation = -16.363492 kcal Electronic energy + Delta-G solvation = -13765.871598 eV Core-core repulsion = 11421.990978 eV Total energy + Delta-G solvation = -2343.880620 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.96332 -37.42543 -35.16838 -32.70218 -30.51648 -29.12993 -26.19620 -23.06517 -22.53672 -20.88607 -18.24437 -17.94917 -17.37864 -15.76381 -14.81655 -14.68177 -14.41228 -13.80897 -13.49700 -13.24825 -12.77083 -12.52488 -12.38839 -12.23834 -11.52661 -11.19403 -10.79373 -10.61928 -10.47082 -10.27923 -9.93436 -9.86486 -9.17175 -8.74294 -8.41383 -6.93947 -6.63383 -4.47971 1.96961 2.18665 2.70734 3.10329 3.27424 3.39006 3.53797 4.12105 4.25943 4.84672 5.08456 5.12190 5.21898 5.52049 5.63735 5.83597 5.89926 5.98778 6.17158 6.23626 6.28034 6.38826 6.54450 6.71581 7.37160 7.54253 8.11387 8.27579 8.89956 9.03986 10.40079 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.033144 B = 0.013166 C = 0.010700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.585616 B = 2126.111346 C = 2616.264858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.098 3.902 3 Si 0.880 3.120 4 H -0.246 1.246 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.377 4.377 8 H 0.115 0.885 9 N -0.369 5.369 10 C 0.469 3.531 11 O -0.476 6.476 12 S -0.127 6.127 13 C -0.250 4.250 14 C 0.118 3.882 15 C -0.046 4.046 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.017 4.017 19 H 0.282 0.718 20 H 0.083 0.917 21 H 0.086 0.914 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.492 -5.738 4.841 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.115 4.115 3 Si 0.706 3.294 4 H -0.171 1.171 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.506 4.506 8 H 0.132 0.868 9 N -0.074 5.074 10 C 0.154 3.846 11 O -0.359 6.359 12 S 0.115 5.885 13 C -0.370 4.370 14 C 0.003 3.997 15 C -0.086 4.086 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.057 4.057 19 H 0.092 0.908 20 H 0.101 0.899 21 H 0.104 0.896 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.723 -4.742 3.434 12.217 hybrid contribution -0.706 0.544 0.771 1.178 sum 10.017 -4.199 4.204 11.647 Atomic orbital electron populations 1.69755 1.06528 1.29139 1.41334 1.25197 0.95142 0.99315 0.91866 0.86751 0.80112 0.82667 0.79872 1.17071 1.21352 1.19357 1.19077 0.84046 0.97843 1.49585 0.86757 1.41809 1.09831 1.36464 1.19305 1.21905 0.90441 0.88055 0.84230 1.90768 1.56717 1.41061 1.47385 1.85191 1.15668 1.53517 1.34090 1.22934 0.97547 1.12883 1.03658 1.20300 0.87703 0.96543 0.95137 1.20563 0.99213 0.95795 0.93004 1.21549 0.94337 0.97737 1.01803 1.21657 0.97020 1.00311 0.96395 1.19751 0.92903 0.97845 0.95154 0.90826 0.89861 0.89599 0.91348 0.91588 0.91491 0.91560 0.91402 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.15 13.96 55.49 0.77 -23.37 15 2 C 0.10 2.79 5.01 -17.50 -0.09 2.70 15 3 Si 0.88 23.12 24.93 -169.99 -4.24 18.88 15 4 H -0.25 -6.81 6.32 56.52 0.36 -6.46 15 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 6 H -0.27 -7.04 7.11 56.52 0.40 -6.63 15 7 C -0.38 -10.33 9.11 -14.91 -0.14 -10.46 15 8 H 0.11 3.14 7.27 -52.49 -0.38 2.76 15 9 N -0.37 -9.34 2.32 -59.96 -0.14 -9.48 15 10 C 0.47 12.37 6.65 53.74 0.36 12.73 15 11 O -0.48 -13.88 13.75 5.15 0.07 -13.81 15 12 S -0.13 -2.74 23.19 -107.50 -2.49 -5.23 15 13 C -0.25 -4.75 6.40 -36.09 -0.23 -4.98 15 14 C 0.12 2.46 6.54 -80.96 -0.53 1.93 15 15 C -0.05 -0.76 5.49 -27.02 -0.15 -0.91 15 16 C -0.12 -1.45 5.84 -26.69 -0.16 -1.60 15 17 C -0.11 -1.35 6.01 -26.37 -0.16 -1.51 15 18 C -0.02 -0.24 6.26 -27.78 -0.17 -0.41 15 19 H 0.28 7.57 8.31 -40.82 -0.34 7.23 15 20 H 0.08 1.34 8.14 -51.93 -0.42 0.91 15 21 H 0.09 1.46 7.24 -51.93 -0.38 1.08 15 22 H 0.07 0.70 8.14 -51.93 -0.42 0.27 15 23 H 0.07 0.82 8.10 -51.93 -0.42 0.40 15 24 H 0.07 0.81 8.12 -51.93 -0.42 0.39 15 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 15 26 H 0.07 0.87 8.14 -51.93 -0.42 0.44 15 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 15 LS Contribution 235.75 15.07 3.55 3.55 Total: -1.00 -31.01 235.75 -6.63 -37.63 By element: Atomic # 1 Polarization: -2.77 SS G_CDS: -2.89 Total: -5.66 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -1.26 Total: -2.52 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.64 Total: -32.85 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.07 Total: -13.81 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.24 Total: 18.88 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.49 Total: -5.23 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.01 -6.63 -37.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306634965.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.271 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds