Wall clock time and date at job start Mon Mar 30 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31477 * 1 3 3 Si 1.86797 * 119.99866 * 2 1 4 4 H 1.48500 * 109.46989 * 275.69592 * 3 2 1 5 5 H 1.48505 * 109.47275 * 35.69334 * 3 2 1 6 6 H 1.48503 * 109.47163 * 155.69350 * 3 2 1 7 7 C 1.38780 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00336 * 339.19533 * 7 2 1 9 9 N 1.37286 * 119.99896 * 159.19291 * 7 2 1 10 10 C 1.34072 * 120.75760 * 318.19149 * 9 7 2 11 11 O 1.21745 * 127.56194 * 0.02562 * 10 9 7 12 12 S 1.77370 * 104.88069 * 180.02562 * 10 9 7 13 13 C 1.76696 * 94.13945 * 0.02562 * 12 10 9 14 14 C 1.33622 * 106.65799 * 359.97438 * 13 12 10 15 15 C 1.52538 * 121.44883 * 180.02562 * 14 13 12 16 16 C 1.52899 * 108.92751 * 341.69685 * 15 14 13 17 17 C 1.53178 * 109.58335 * 52.04859 * 16 15 14 18 18 C 1.50366 * 126.74078 * 179.73399 * 13 12 10 19 19 H 0.97003 * 120.00092 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.56520 * 101.52702 * 15 14 13 21 21 H 1.08996 * 109.56322 * 221.86098 * 15 14 13 22 22 H 1.09005 * 109.45515 * 172.08358 * 16 15 14 23 23 H 1.09004 * 109.45741 * 292.01423 * 16 15 14 24 24 H 1.09003 * 109.59584 * 49.80853 * 17 16 15 25 25 H 1.08994 * 109.60555 * 170.28505 * 17 16 15 26 26 H 1.09003 * 109.60736 * 284.39903 * 18 13 12 27 27 H 1.08997 * 109.61248 * 44.91816 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 2.3759 2.1159 -1.3932 5 1 1.5115 2.6150 0.8169 6 1 3.6013 1.4085 0.5763 7 6 2.0087 -1.2019 0.0005 8 1 1.5216 -2.1066 0.3331 9 7 3.3144 -1.2408 -0.4218 10 6 3.7060 -0.5523 -1.5035 11 8 3.0224 0.1560 -2.2200 12 16 5.4381 -0.8994 -1.6620 13 6 5.4873 -1.9531 -0.2445 14 6 4.2472 -1.9851 0.2522 15 6 3.9079 -2.8044 1.4933 16 6 5.0086 -3.8413 1.7193 17 6 6.3743 -3.1476 1.7235 18 6 6.6885 -2.6783 0.2960 19 1 -0.4850 0.8401 -0.0004 20 1 3.8438 -2.1456 2.3593 21 1 2.9539 -3.3109 1.3467 22 1 4.8500 -4.3362 2.6775 23 1 4.9799 -4.5815 0.9197 24 1 6.3469 -2.2902 2.3959 25 1 7.1401 -3.8496 2.0534 26 1 6.9099 -3.5397 -0.3343 27 1 7.5452 -2.0047 0.3135 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306634965.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:54 Heat of formation + Delta-G solvation = -36.511841 kcal Electronic energy + Delta-G solvation = -13766.745296 eV Core-core repulsion = 11421.990978 eV Total energy + Delta-G solvation = -2344.754318 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.76148 -39.03160 -36.82168 -34.76245 -31.83339 -30.65704 -28.02146 -24.78795 -23.92544 -22.31246 -20.03599 -19.78555 -18.97978 -17.75052 -16.62506 -16.46082 -15.89997 -15.54379 -15.15187 -14.63142 -14.38297 -14.18526 -13.80602 -13.70826 -13.27308 -12.86509 -12.61149 -12.32251 -11.76265 -11.62093 -11.55731 -11.20971 -11.14478 -10.71192 -10.29803 -8.82353 -8.64794 -6.62043 0.09012 0.46253 0.99942 1.08103 1.16737 1.26046 1.56274 2.10624 2.43844 2.73477 3.86635 4.10273 4.13281 4.27640 4.38915 4.65968 4.72241 4.94176 5.03734 5.14683 5.20993 5.28017 5.33421 5.51005 5.57438 5.58451 6.16760 6.24498 6.80342 7.06115 8.28477 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.033144 B = 0.013166 C = 0.010700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.585616 B = 2126.111346 C = 2616.264858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.062 3.938 3 Si 0.921 3.079 4 H -0.273 1.273 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.375 4.375 8 H 0.104 0.896 9 N -0.383 5.383 10 C 0.434 3.566 11 O -0.528 6.528 12 S -0.093 6.093 13 C -0.218 4.218 14 C 0.082 3.918 15 C -0.045 4.045 16 C -0.110 4.110 17 C -0.109 4.109 18 C -0.022 4.022 19 H 0.286 0.714 20 H 0.085 0.915 21 H 0.072 0.928 22 H 0.099 0.901 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.444 -7.256 6.398 16.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.148 4.148 3 Si 0.747 3.253 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.504 4.504 8 H 0.121 0.879 9 N -0.090 5.090 10 C 0.120 3.880 11 O -0.416 6.416 12 S 0.150 5.850 13 C -0.338 4.338 14 C -0.030 4.030 15 C -0.085 4.085 16 C -0.147 4.147 17 C -0.148 4.148 18 C -0.062 4.062 19 H 0.096 0.904 20 H 0.103 0.897 21 H 0.091 0.909 22 H 0.117 0.883 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.124 0.876 26 H 0.109 0.891 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.718 -6.294 5.038 15.912 hybrid contribution -1.438 0.878 0.260 1.705 sum 12.280 -5.417 5.298 14.429 Atomic orbital electron populations 1.69791 1.07206 1.29851 1.43440 1.25688 0.95622 1.01287 0.92162 0.86114 0.79581 0.81200 0.78388 1.19964 1.19145 1.19409 1.19037 0.85431 0.97222 1.48675 0.87882 1.41995 1.09983 1.37176 1.19813 1.22513 0.92623 0.88436 0.84472 1.90718 1.58999 1.42991 1.48883 1.85035 1.10798 1.53789 1.35383 1.23952 0.98738 1.10220 1.00848 1.21037 0.87775 0.97100 0.97097 1.20744 1.00541 0.96262 0.90940 1.21577 0.93111 0.96443 1.03604 1.21700 0.97466 1.01125 0.94503 1.20131 0.90759 0.98409 0.96882 0.90374 0.89696 0.90937 0.88284 0.91260 0.91601 0.87562 0.89057 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.63 13.96 21.63 0.30 -51.33 15 2 C 0.06 3.64 5.01 84.88 0.43 4.06 15 3 Si 0.92 48.84 24.93 68.60 1.71 50.55 15 4 H -0.27 -15.65 6.32 99.48 0.63 -15.02 15 5 H -0.27 -12.89 7.11 99.48 0.71 -12.18 15 6 H -0.27 -14.02 7.11 99.48 0.71 -13.31 15 7 C -0.37 -21.04 9.11 83.97 0.76 -20.28 15 8 H 0.10 5.86 7.27 -2.91 -0.02 5.84 15 9 N -0.38 -19.55 2.32 -462.21 -1.07 -20.62 15 10 C 0.43 23.20 6.65 129.90 0.86 24.06 15 11 O -0.53 -31.94 13.75 -4.49 -0.06 -32.00 15 12 S -0.09 -3.89 23.19 -56.49 -1.31 -5.20 15 13 C -0.22 -7.62 6.40 24.53 0.16 -7.47 15 14 C 0.08 3.28 6.54 41.29 0.27 3.55 15 15 C -0.05 -1.40 5.49 30.41 0.17 -1.23 15 16 C -0.11 -2.23 5.84 30.62 0.18 -2.05 15 17 C -0.11 -1.93 6.01 30.83 0.19 -1.75 15 18 C -0.02 -0.50 6.26 29.92 0.19 -0.32 15 19 H 0.29 15.81 8.31 -92.71 -0.77 15.04 15 20 H 0.08 2.57 8.14 -2.39 -0.02 2.56 15 21 H 0.07 2.42 7.24 -2.39 -0.02 2.40 15 22 H 0.10 1.48 8.14 -2.38 -0.02 1.47 15 23 H 0.07 1.40 8.10 -2.38 -0.02 1.38 15 24 H 0.07 1.23 8.12 -2.39 -0.02 1.21 15 25 H 0.11 1.18 8.14 -2.39 -0.02 1.16 15 26 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15 27 H 0.09 1.74 8.14 -2.39 -0.02 1.73 15 Total: -1.00 -69.85 235.75 3.87 -65.98 By element: Atomic # 1 Polarization: -7.06 SS G_CDS: 1.10 Total: -5.96 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 3.20 Total: -1.41 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -0.77 Total: -71.95 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.06 Total: -32.00 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 1.71 Total: 50.55 kcal Atomic # 16 Polarization: -3.89 SS G_CDS: -1.31 Total: -5.20 kcal Total: -69.85 3.87 -65.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306634965.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.468 kcal (2) G-P(sol) polarization free energy of solvation -69.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds