Wall clock time and date at job start Mon Mar 30 2020 03:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42096 * 109.47196 * 2 1 4 4 N 1.65597 * 103.00105 * 109.06048 * 2 1 3 5 5 C 1.38854 * 120.00466 * 179.97438 * 4 2 1 6 6 C 1.39566 * 119.84597 * 134.99340 * 5 4 2 7 7 C 1.36338 * 120.16116 * 180.25508 * 6 5 4 8 8 C 1.40893 * 119.83636 * 359.50729 * 7 6 5 9 9 C 1.41133 * 120.15364 * 180.25178 * 8 7 6 10 10 H 1.07994 * 120.00344 * 24.83920 * 9 8 7 11 11 C 1.39866 * 119.99916 * 204.83980 * 9 8 7 12 12 N 1.30910 * 119.99864 * 17.95871 * 11 9 8 13 13 Si 1.86802 * 120.00165 * 197.96719 * 11 9 8 14 14 H 1.48492 * 109.47275 * 59.99742 * 13 11 9 15 15 H 1.48502 * 109.46983 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.46916 * 299.99642 * 13 11 9 17 17 C 1.40883 * 119.68755 * 0.47142 * 8 7 6 18 18 C 1.36338 * 119.83541 * 359.77859 * 17 8 7 19 19 H 1.08997 * 109.46722 * 310.94186 * 1 2 3 20 20 H 1.08998 * 109.46615 * 70.94185 * 1 2 3 21 21 H 1.08997 * 109.47161 * 190.93856 * 1 2 3 22 22 H 0.96997 * 120.00011 * 359.97438 * 4 2 1 23 23 H 1.08002 * 119.91752 * 359.97438 * 6 5 4 24 24 H 1.07995 * 120.08351 * 179.74617 * 7 6 5 25 25 H 0.97001 * 120.00040 * 179.97438 * 12 11 9 26 26 H 1.08002 * 120.07962 * 179.76054 * 17 8 7 27 27 H 1.08005 * 119.92015 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 7 2.1866 -0.5269 1.5251 5 6 3.5144 -0.6600 1.9087 6 6 3.9287 -0.1845 3.1537 7 6 5.2320 -0.3072 3.5348 8 6 6.1593 -0.9251 2.6725 9 6 7.5089 -1.0604 3.0624 10 1 7.7692 -1.0775 4.1103 11 6 8.5094 -1.1723 2.0915 12 7 8.2679 -0.8075 0.8576 13 14 10.1902 -1.8427 2.5552 14 1 10.0445 -3.2237 3.0811 15 1 11.0645 -1.8602 1.3550 16 1 10.7976 -0.9775 3.5981 17 6 5.7338 -1.4031 1.4174 18 6 4.4284 -1.2690 1.0474 19 1 -0.3633 0.6734 0.7763 20 1 -0.3632 0.3356 -0.9713 21 1 -0.3633 -1.0090 0.1950 22 1 1.4772 -0.7426 2.1504 23 1 3.2161 0.2858 3.8151 24 1 5.5521 0.0648 4.4968 25 1 8.9619 -0.8847 0.1844 26 1 6.4400 -1.8743 0.7498 27 1 4.1009 -1.6345 0.0854 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306645824.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:44 Heat of formation + Delta-G solvation = -45.300090 kcal Electronic energy + Delta-G solvation = -12922.431439 eV Core-core repulsion = 10577.296034 eV Total energy + Delta-G solvation = -2345.135406 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.65535 -36.68653 -36.23065 -34.31027 -31.43544 -30.50328 -29.56518 -26.36187 -23.04748 -22.46253 -19.29729 -19.13253 -18.12850 -17.07206 -16.92345 -15.74671 -15.52009 -15.21070 -14.72047 -14.46402 -13.94460 -13.83985 -13.49272 -13.39363 -13.09045 -12.76159 -12.71316 -12.26963 -11.88135 -11.63063 -11.52203 -11.12555 -10.64120 -9.48190 -9.16561 -8.73744 -8.57638 -6.21939 0.75042 1.09156 1.23053 1.41992 1.53177 1.59422 1.77741 2.24894 2.74898 3.18587 3.74630 4.31537 4.40610 4.44688 4.52084 4.69430 5.01451 5.14176 5.17922 5.36878 5.39668 5.68974 5.88848 6.08105 6.13398 6.38020 6.59737 6.73569 6.96745 7.08556 8.37574 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.062070 B = 0.006553 C = 0.006204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.997972 B = 4271.566536 C = 4512.327460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.517 4.517 2 S 1.524 4.476 3 O -0.976 6.976 4 N -0.944 5.944 5 C 0.048 3.952 6 C -0.122 4.122 7 C -0.228 4.228 8 C 0.067 3.933 9 C -0.500 4.500 10 H 0.074 0.926 11 C 0.035 3.965 12 N -0.826 5.826 13 Si 0.984 3.016 14 H -0.258 1.258 15 H -0.267 1.267 16 H -0.264 1.264 17 C -0.167 4.167 18 C -0.128 4.128 19 H 0.063 0.937 20 H 0.124 0.876 21 H 0.144 0.856 22 H 0.400 0.600 23 H 0.103 0.897 24 H 0.095 0.905 25 H 0.289 0.711 26 H 0.113 0.887 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.519 -5.848 -3.946 11.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.676 4.676 2 S 1.628 4.372 3 O -0.961 6.961 4 N -0.688 5.688 5 C -0.049 4.049 6 C -0.144 4.144 7 C -0.248 4.248 8 C 0.064 3.936 9 C -0.530 4.530 10 H 0.092 0.908 11 C -0.179 4.179 12 N -0.452 5.452 13 Si 0.804 3.196 14 H -0.182 1.182 15 H -0.191 1.191 16 H -0.189 1.189 17 C -0.187 4.187 18 C -0.149 4.149 19 H 0.082 0.918 20 H 0.143 0.857 21 H 0.162 0.838 22 H 0.231 0.769 23 H 0.121 0.879 24 H 0.113 0.887 25 H 0.100 0.900 26 H 0.131 0.869 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.686 -5.423 -5.006 11.398 hybrid contribution -0.440 1.425 2.091 2.568 sum -9.126 -3.999 -2.915 10.381 Atomic orbital electron populations 1.28030 1.22400 1.09325 1.07797 1.69659 0.84445 0.93721 0.89326 1.92909 1.76304 1.44482 1.82360 1.49857 1.07781 1.79911 1.31246 1.16930 0.84755 1.07065 0.96195 1.20621 0.95524 1.00746 0.97543 1.20810 0.94201 1.08219 1.01571 1.17986 0.93565 0.89553 0.92455 1.19726 0.91993 1.46682 0.94612 0.90833 1.26744 1.04835 0.92228 0.94123 1.69899 1.37086 1.34229 1.03990 0.85233 0.75783 0.79709 0.78826 1.18215 1.19086 1.18874 1.20989 0.94802 1.04337 0.98546 1.20776 0.93624 1.00675 0.99846 0.91788 0.85725 0.83761 0.76866 0.87854 0.88687 0.89999 0.86910 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 -9.29 10.79 113.37 1.22 -8.06 15 2 S 1.52 41.99 13.71 -56.49 -0.77 41.21 15 3 O -0.98 -44.05 17.96 -148.98 -2.68 -46.73 15 4 N -0.94 -30.85 5.63 -51.07 -0.29 -31.13 15 5 C 0.05 2.06 6.21 38.67 0.24 2.30 15 6 C -0.12 -5.74 9.90 22.15 0.22 -5.52 15 7 C -0.23 -11.77 9.74 22.48 0.22 -11.55 15 8 C 0.07 3.71 5.57 -21.27 -0.12 3.59 15 9 C -0.50 -27.48 9.03 23.38 0.21 -27.27 15 10 H 0.07 3.90 7.91 -2.91 -0.02 3.88 15 11 C 0.04 1.80 5.13 85.22 0.44 2.24 15 12 N -0.83 -43.42 10.96 21.82 0.24 -43.18 15 13 Si 0.98 38.29 29.60 68.60 2.03 40.32 15 14 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 15 H -0.27 -9.75 7.11 99.48 0.71 -9.04 15 16 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 17 C -0.17 -8.67 8.64 22.47 0.19 -8.48 15 18 C -0.13 -5.70 9.33 22.15 0.21 -5.49 15 19 H 0.06 1.39 8.14 -2.39 -0.02 1.37 15 20 H 0.12 1.83 8.14 -2.39 -0.02 1.81 15 21 H 0.14 1.57 8.14 -2.39 -0.02 1.55 15 22 H 0.40 10.66 8.75 -96.75 -0.85 9.82 15 23 H 0.10 4.36 8.06 -2.91 -0.02 4.34 15 24 H 0.09 4.69 8.06 -2.91 -0.02 4.66 15 25 H 0.29 13.69 8.30 -92.71 -0.77 12.92 15 26 H 0.11 5.99 6.16 -2.91 -0.02 5.98 15 27 H 0.13 4.72 7.67 -2.91 -0.02 4.70 15 Total: -1.00 -75.86 252.85 1.70 -74.16 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.34 Total: 23.59 kcal Atomic # 6 Polarization: -61.07 SS G_CDS: 2.83 Total: -58.24 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -0.05 Total: -74.31 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -2.68 Total: -46.73 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Atomic # 16 Polarization: 41.99 SS G_CDS: -0.77 Total: 41.21 kcal Total: -75.86 1.70 -74.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306645824.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.861 kcal (2) G-P(sol) polarization free energy of solvation -75.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds