Wall clock time and date at job start Mon Mar 30 2020 02:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39070 * 119.70898 * 2 1 4 4 F 1.35098 * 119.94584 * 359.97409 * 3 2 1 5 5 C 1.37687 * 120.11514 * 179.97438 * 3 2 1 6 6 C 1.41264 * 119.55152 * 359.95039 * 5 3 2 7 7 C 1.40345 * 120.27936 * 180.02562 * 6 5 3 8 8 H 1.08003 * 120.00023 * 157.43273 * 7 6 5 9 9 C 1.46537 * 120.00088 * 337.44530 * 7 6 5 10 10 N 1.29505 * 119.99682 * 338.80366 * 9 7 6 11 11 Si 1.86802 * 120.00234 * 158.81182 * 9 7 6 12 12 H 1.48496 * 109.47188 * 59.99486 * 11 9 7 13 13 H 1.48500 * 109.46814 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46959 * 299.99470 * 11 9 7 15 15 C 1.41258 * 119.44587 * 0.05102 * 6 5 3 16 16 C 1.36496 * 119.86362 * 359.96746 * 15 6 5 17 17 N 1.48011 * 119.77458 * 179.97438 * 16 15 6 18 18 O 1.31697 * 120.00030 * 352.41507 * 17 16 15 19 19 O 1.31703 * 120.00080 * 172.42241 * 17 16 15 20 20 H 1.08995 * 109.47046 * 261.05257 * 1 2 3 21 21 H 1.09002 * 109.47529 * 21.06002 * 1 2 3 22 22 H 1.09000 * 109.46548 * 141.05732 * 1 2 3 23 23 H 1.08001 * 120.22059 * 179.97438 * 5 3 2 24 24 H 0.97001 * 119.99861 * 180.02562 * 10 9 7 25 25 H 1.07992 * 120.06802 * 180.25499 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.2079 0.0000 4 9 1.5137 2.3738 -0.0005 5 6 3.5731 1.2177 0.0005 6 6 4.2785 -0.0063 0.0021 7 6 5.6819 -0.0141 0.0032 8 1 6.2168 -0.8805 0.3634 9 6 6.4216 1.1533 -0.4839 10 7 5.8451 2.0010 -1.2753 11 14 8.1960 1.4186 0.0362 12 1 9.0188 0.2633 -0.4037 13 1 8.7145 2.6617 -0.5891 14 1 8.2654 1.5414 1.5145 15 6 3.5595 -1.2222 0.0021 16 6 2.1947 -1.2047 0.0012 17 7 1.4433 -2.4799 0.0005 18 8 2.0831 -3.6212 -0.1497 19 8 0.1348 -2.4733 0.1500 20 1 -0.3633 -0.1598 1.0151 21 1 -0.3634 0.9590 -0.3693 22 1 -0.3632 -0.7993 -0.6459 23 1 4.1100 2.1547 0.0001 24 1 6.3348 2.7736 -1.5981 25 1 4.0886 -2.1636 0.0075 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306705118.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:29 Heat of formation + Delta-G solvation = -28.709615 kcal Electronic energy + Delta-G solvation = -14960.722640 eV Core-core repulsion = 12050.093475 eV Total energy + Delta-G solvation = -2910.629165 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.85443 -40.82257 -38.93640 -36.11949 -35.57977 -33.40188 -31.98581 -29.73667 -27.59615 -25.58816 -23.25397 -22.63266 -20.42293 -19.22923 -18.44710 -17.35669 -17.30269 -17.01090 -16.63589 -16.44909 -16.31061 -14.70298 -14.35081 -14.17226 -13.85532 -13.65950 -13.20758 -13.05912 -12.79260 -12.57617 -12.37233 -12.19055 -11.98449 -11.85915 -11.47171 -11.26129 -10.16741 -9.74078 -9.10225 -6.69889 -1.58367 0.22181 0.39135 0.52804 1.36718 1.43684 1.52556 2.08346 2.21968 3.05300 3.35585 3.92651 3.96309 4.22471 4.31832 4.43520 4.68287 4.75973 4.80856 4.87059 5.12280 5.25209 5.29193 5.46641 5.69656 5.90293 6.12229 6.30098 6.42138 7.82216 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.032824 B = 0.009062 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.831650 B = 3089.112388 C = 3849.554744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.229 4.229 3 C 0.125 3.875 4 F -0.142 7.142 5 C -0.191 4.191 6 C 0.095 3.905 7 C -0.446 4.446 8 H 0.107 0.893 9 C 0.040 3.960 10 N -0.761 5.761 11 Si 1.000 3.000 12 H -0.252 1.252 13 H -0.260 1.260 14 H -0.253 1.253 15 C -0.191 4.191 16 C 0.062 3.938 17 N -0.007 5.007 18 O -0.233 6.233 19 O -0.170 6.170 20 H 0.072 0.928 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.136 0.864 24 H 0.314 0.686 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 2.857 1.444 3.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.233 4.233 3 C 0.105 3.895 4 F -0.121 7.121 5 C -0.212 4.212 6 C 0.091 3.909 7 C -0.470 4.470 8 H 0.125 0.875 9 C -0.188 4.188 10 N -0.381 5.381 11 Si 0.818 3.182 12 H -0.175 1.175 13 H -0.184 1.184 14 H -0.177 1.177 15 C -0.212 4.212 16 C -0.024 4.024 17 N 0.465 4.535 18 O -0.414 6.414 19 O -0.369 6.369 20 H 0.090 0.910 21 H 0.085 0.915 22 H 0.096 0.904 23 H 0.153 0.847 24 H 0.127 0.873 25 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.366 3.585 1.254 4.475 hybrid contribution 0.105 -0.104 -0.046 0.154 sum 2.471 3.481 1.208 4.437 Atomic orbital electron populations 1.20751 0.88306 1.02780 1.02920 1.19058 0.98047 0.89045 1.17112 1.16984 0.89521 0.79774 1.03229 1.91390 1.80318 1.46115 1.94261 1.21628 0.90824 1.00338 1.08374 1.17317 0.94197 0.88680 0.90711 1.21297 0.90231 1.01685 1.33810 0.87500 1.28516 1.06314 0.92887 0.91045 1.69073 1.42468 1.09382 1.17159 0.84958 0.73431 0.79551 0.80284 1.17538 1.18381 1.17676 1.20873 0.90051 1.00052 1.10234 1.19507 0.90881 0.79344 1.12705 1.50769 1.02621 1.04819 0.95270 1.96197 1.69853 1.17102 1.58199 1.96096 0.91259 1.95720 1.53778 0.90963 0.91465 0.90388 0.84669 0.87317 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.40 8.41 71.24 0.60 -2.80 15 2 C -0.23 -10.04 5.92 -19.55 -0.12 -10.16 15 3 C 0.13 5.57 7.23 22.34 0.16 5.73 15 4 F -0.14 -5.90 16.32 44.97 0.73 -5.17 15 5 C -0.19 -8.87 8.78 22.88 0.20 -8.67 15 6 C 0.09 4.47 5.62 -21.28 -0.12 4.35 15 7 C -0.45 -19.77 9.30 24.95 0.23 -19.54 15 8 H 0.11 4.43 8.01 -2.91 -0.02 4.40 15 9 C 0.04 1.61 5.24 87.20 0.46 2.06 15 10 N -0.76 -31.83 11.18 23.21 0.26 -31.57 15 11 Si 1.00 29.39 29.68 68.60 2.04 31.43 15 12 H -0.25 -7.23 7.11 99.48 0.71 -6.52 15 13 H -0.26 -7.12 7.11 99.48 0.71 -6.41 15 14 H -0.25 -7.38 7.11 99.48 0.71 -6.67 15 15 C -0.19 -8.89 9.29 22.61 0.21 -8.68 15 16 C 0.06 2.85 6.81 36.08 0.25 3.10 15 17 N -0.01 -0.30 4.98 -47.17 -0.24 -0.54 15 18 O -0.23 -10.83 19.13 3.52 0.07 -10.76 15 19 O -0.17 -7.34 15.93 3.51 0.06 -7.29 15 20 H 0.07 2.54 8.10 -2.39 -0.02 2.52 15 21 H 0.07 2.29 7.38 -2.39 -0.02 2.27 15 22 H 0.08 2.93 5.93 -2.39 -0.01 2.91 15 23 H 0.14 6.28 6.19 -2.91 -0.02 6.26 15 24 H 0.31 11.36 8.27 -92.71 -0.77 10.59 15 25 H 0.13 5.92 7.55 -2.91 -0.02 5.90 15 Total: -1.00 -49.27 236.55 6.03 -43.24 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.24 Total: 15.25 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 1.87 Total: -34.60 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.02 Total: -32.10 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.12 Total: -18.05 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.73 Total: -5.17 kcal Atomic # 14 Polarization: 29.39 SS G_CDS: 2.04 Total: 31.43 kcal Total: -49.27 6.03 -43.24 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306705118.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.535 kcal (2) G-P(sol) polarization free energy of solvation -49.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds