Wall clock time and date at job start Mon Mar 30 2020 02:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30554 * 1 3 3 Si 1.86803 * 120.00008 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99839 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99696 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00037 * 3 2 1 7 7 C 1.40705 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99996 * 180.02562 * 7 2 1 9 9 N 1.32696 * 119.99540 * 359.97438 * 7 2 1 10 10 C 1.32099 * 119.99824 * 179.97438 * 9 7 2 11 11 C 1.41824 * 119.99744 * 180.28010 * 10 9 7 12 12 C 1.40412 * 120.24772 * 179.44818 * 11 10 9 13 13 C 1.37688 * 119.82521 * 179.78862 * 12 11 10 14 14 Cl 1.73598 * 119.83007 * 180.22994 * 13 12 11 15 15 C 1.38833 * 120.34386 * 0.46620 * 13 12 11 16 16 C 1.38205 * 120.51419 * 359.78503 * 15 13 12 17 17 C 1.38496 * 120.16604 * 359.97438 * 16 15 13 18 18 O 1.35663 * 120.17720 * 180.02562 * 17 16 15 19 19 H 0.97000 * 119.99450 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.99714 * 359.97438 * 10 9 7 21 21 H 1.07998 * 120.08614 * 359.97438 * 12 11 10 22 22 H 1.08002 * 119.74147 * 179.76085 * 15 13 12 23 23 H 1.07999 * 119.91725 * 179.97438 * 16 15 13 24 24 H 0.96700 * 114.00122 * 269.98085 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2396 1.6178 0.0000 4 1 2.4871 2.0464 -1.4001 5 1 1.4370 2.6527 0.7000 6 1 3.5371 1.4402 0.7000 7 6 2.0091 -1.2185 0.0005 8 1 3.0890 -1.2184 0.0010 9 7 1.3456 -2.3677 0.0016 10 6 2.0061 -3.5117 0.0016 11 6 1.2970 -4.7399 -0.0033 12 6 1.9937 -5.9589 -0.0150 13 6 1.2965 -7.1462 -0.0153 14 17 2.1578 -8.6534 -0.0237 15 6 -0.0919 -7.1443 -0.0138 16 6 -0.7919 -5.9527 -0.0076 17 6 -0.1121 -4.7461 -0.0022 18 8 -0.7991 -3.5763 0.0044 19 1 -0.4849 0.8401 -0.0004 20 1 3.0861 -3.5116 0.0003 21 1 3.0736 -5.9652 -0.0208 22 1 -0.6289 -8.0813 -0.0180 23 1 -1.8719 -5.9624 -0.0069 24 1 -0.9989 -3.2325 -0.8770 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306764370.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:03 Heat of formation + Delta-G solvation = -22.198837 kcal Electronic energy + Delta-G solvation = -12547.228908 eV Core-core repulsion = 10065.218447 eV Total energy + Delta-G solvation = -2482.010461 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.60703 -36.22797 -35.37464 -34.89039 -32.96396 -30.31012 -28.54315 -25.67721 -22.62099 -21.54015 -19.50307 -17.54822 -16.92401 -15.91182 -15.43533 -14.75194 -14.17758 -13.47906 -13.27100 -12.84044 -12.46151 -12.18563 -11.90029 -11.71531 -11.21392 -11.16497 -10.90111 -10.71878 -10.31087 -10.28684 -9.33772 -9.26558 -7.99079 -7.52708 -7.45087 -7.40223 -4.67841 1.93074 2.10828 2.71354 2.75632 2.81186 2.82831 3.48247 3.55284 4.50233 5.38557 5.54027 5.66293 5.88487 6.25762 6.33334 6.37503 6.53217 6.94191 6.97226 7.09233 7.13150 7.37262 7.50805 7.77404 7.87571 8.53610 9.00745 9.43782 10.26607 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.056569 B = 0.006245 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.854417 B = 4482.735792 C = 4965.208143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.064 3.936 3 Si 0.937 3.063 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.203 4.203 8 H 0.062 0.938 9 N -0.298 5.298 10 C -0.216 4.216 11 C 0.055 3.945 12 C -0.170 4.170 13 C -0.013 4.013 14 Cl -0.108 7.108 15 C -0.186 4.186 16 C -0.119 4.119 17 C 0.061 3.939 18 O -0.460 6.460 19 H 0.295 0.705 20 H 0.059 0.941 21 H 0.117 0.883 22 H 0.113 0.887 23 H 0.116 0.884 24 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 -2.596 -1.617 3.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.167 4.167 3 Si 0.758 3.242 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.176 1.176 7 C -0.369 4.369 8 H 0.080 0.920 9 N -0.011 5.011 10 C -0.376 4.376 11 C 0.053 3.947 12 C -0.191 4.191 13 C -0.039 4.039 14 Cl -0.080 7.080 15 C -0.206 4.206 16 C -0.138 4.138 17 C 0.013 3.987 18 O -0.268 6.268 19 H 0.106 0.894 20 H 0.076 0.924 21 H 0.135 0.865 22 H 0.131 0.869 23 H 0.134 0.866 24 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.578 -2.612 -0.997 2.855 hybrid contribution 1.333 0.538 -0.467 1.512 sum 0.755 -2.074 -1.465 2.649 Atomic orbital electron populations 1.69636 1.08337 1.31061 1.22881 1.26713 0.95216 1.02412 0.92373 0.85774 0.80388 0.77855 0.80138 1.18380 1.19082 1.17639 1.21183 0.92687 0.90002 1.33054 0.92025 1.67084 1.39916 0.97689 0.96364 1.21037 0.93043 0.89697 1.33814 1.18095 0.92006 0.92344 0.92224 1.20679 0.99021 0.89809 1.09575 1.20545 0.91971 0.85106 1.06274 1.98287 1.77980 1.34367 1.97338 1.20314 0.91437 0.97571 1.11279 1.21067 0.99105 0.91719 1.01886 1.18623 0.89422 0.85473 1.05148 1.84835 1.74422 1.35739 1.31771 0.89405 0.92362 0.86510 0.86888 0.86573 0.77351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.28 13.58 55.59 0.76 -15.53 14 2 C 0.06 1.44 5.53 -17.16 -0.09 1.35 14 3 Si 0.94 16.03 29.57 -169.99 -5.03 11.00 14 4 H -0.26 -4.32 7.11 56.52 0.40 -3.91 14 5 H -0.27 -4.37 7.11 56.52 0.40 -3.97 14 6 H -0.25 -4.32 7.11 56.52 0.40 -3.92 14 7 C -0.20 -5.15 9.74 -16.25 -0.16 -5.31 14 8 H 0.06 1.50 7.75 -52.49 -0.41 1.09 14 9 N -0.30 -8.08 7.67 -11.47 -0.09 -8.17 14 10 C -0.22 -5.64 10.16 -16.07 -0.16 -5.81 14 11 C 0.06 1.34 5.75 -106.70 -0.61 0.72 14 12 C -0.17 -3.65 9.55 -38.96 -0.37 -4.02 14 13 C -0.01 -0.25 6.31 -39.56 -0.25 -0.50 14 14 Cl -0.11 -1.82 28.94 -51.86 -1.50 -3.32 14 15 C -0.19 -3.52 9.82 -39.37 -0.39 -3.91 14 16 C -0.12 -2.37 9.97 -39.50 -0.39 -2.77 14 17 C 0.06 1.40 6.73 -38.48 -0.26 1.14 14 18 O -0.46 -10.98 11.26 -18.69 -0.21 -11.19 14 19 H 0.29 5.91 8.29 -40.82 -0.34 5.57 14 20 H 0.06 1.51 7.95 -52.49 -0.42 1.09 14 21 H 0.12 2.36 8.06 -52.49 -0.42 1.94 14 22 H 0.11 1.86 8.06 -52.49 -0.42 1.43 14 23 H 0.12 2.03 8.06 -52.49 -0.42 1.61 14 24 H 0.37 7.93 9.06 45.56 0.41 8.34 14 LS Contribution 243.12 15.07 3.66 3.66 Total: -1.00 -27.42 243.12 -5.91 -33.33 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -0.81 Total: 9.28 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.69 Total: -19.09 kcal Atomic # 7 Polarization: -24.36 SS G_CDS: 0.67 Total: -23.69 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.21 Total: -11.19 kcal Atomic # 14 Polarization: 16.03 SS G_CDS: -5.03 Total: 11.00 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -1.50 Total: -3.32 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.42 -5.91 -33.33 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306764370.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.134 kcal (2) G-P(sol) polarization free energy of solvation -27.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds